EPISIM statistics

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EPISIM specifications

Information


Unique identifier OMICS_08772
Name EPISIM
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Stability Stable
Maintained Yes

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Publications for EPISIM

EPISIM in publications

 (8)
PMCID: 5338006
PMID: 28262741
DOI: 10.1038/srep43472

[…] - in a multicellular computational model, we developed a 3d biomechanical model (bm) based on ellipsoid cell shapes. we integrated the bm in the multicellular modelling and simulation platform episim. we created a cell behavioural model (cbm) with episim encompassing regulatory feedback loops between the epidermal barrier, water loss to the environment, and water and calcium flow within […]

PMCID: 5322748
PMID: 28096317
DOI: 10.1042/BSR20160177

[…] to these examples, the computational systems biology community has proposed several solutions to the challenge of multi-scale modelling. sütterlin et al. [] developed a novel software workflow (episim) for the semantic integration of sbml-encased models. more recently, somogyi et al. [] developed libroadrunner – a python-based application which supports large-scale problems for sbml-encoded […]

PMCID: 5330541
PMID: 28192427
DOI: 10.1371/journal.pcbi.1005387

[…] classes of cell-based model. a longer-term challenge is to extend such comparison studies across simulation tools, of which there is an increasing ecosystem, including compucell3d [], morpheus [], episim [], cellsys [], virtualleaf [], biocellion [], biofvm [], lbibcell [] and embryomaker []. we emphasize here the lack of ‘benchmarks’ on which to make such comparisons. we propose […]

PMCID: 4938657
PMID: 27185397
DOI: 10.1534/g3.116.028563

[…] contains snp annotation counts. table s7 contains power analyses for the discovery datasets. table s8 contains power analyses for the replication datasets. table s9 contains the penetrance table for episim power simulations. table s10 contains estimates of phenotypic variance explained by additive genetic variance of the included snps. table s11, table s12, table s13, table s14, table s15, table […]

PMCID: 4754447
PMID: 26909350
DOI: 10.3389/fnut.2016.00005

[…] of larger experimental datasets has allowed models to be more comprehensive and in some cases multi-scaled (, –). in addition, development of software workflow, such as epidemic simulation systems (episim) () has facilitated the semantic model integration for biologically skilled scientists especially with the growing number of available models [over 163 nutrition themed systems biology markup […]


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EPISIM institution(s)
Medical Informatics Department, Institute of Medical Biometry and Informatics, University Hospital Heidelberg, Hamamatsu Tissue Imaging and Analysis Center (TIGA), BIOQUANT, University Heidelberg, Heidelberg and Department of Informatics, Heilbronn University, Heilbronn, Germany

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