EpiTEome statistics

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Citations per year

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Tool usage distribution map

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Associated diseases

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EpiTEome specifications

Information


Unique identifier OMICS_18528
Name EpiTEome
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format GFF3
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0
Stability Stable
Requirements
samtools, bedtools, ngsutils, segemehl, perl lib
Source code URL https://codeload.github.com/jdaron/epiTEome/zip/v1.0
Maintained Yes

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Maintainer


  • person_outline Keith Slotkin <>

Publication for EpiTEome

EpiTEome in publication

PMCID: 5930866
PMID: 29743957
DOI: 10.1186/s13100-018-0120-9

[…] their analysis, even though read mapping technologies have evolved or have been specifically designed to efficiently assay repetitive dna from whole genome data. these tools include melt, retroseq, epiteome and mcclintock for te insertion site identification [–], t-lex to identify presence/absence of te copies [], clari-te to resolve nested te structure [], tetoolkit/tetranscripts for te […]


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EpiTEome institution(s)
Department of Molecular Genetics, The Ohio State University, Columbus, OH, USA
EpiTEome funding source(s)
Supported by the Ohio Supercomputer Center and the U.S. National Science Foundation grant MCB-1252370.

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