EpiTEome statistics

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Citations per year

Number of citations per year for the bioinformatics software tool EpiTEome
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Tool usage distribution map

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EpiTEome specifications

Information


Unique identifier OMICS_18528
Name EpiTEome
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format GFF3
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0
Stability Stable
Requirements
samtools, bedtools, ngsutils, segemehl, perl lib
Source code URL https://codeload.github.com/jdaron/epiTEome/zip/v1.0
Maintained Yes

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Versioning


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Maintainer


  • person_outline Keith Slotkin

Publication for EpiTEome

EpiTEome citation

library_books

The case for not masking away repetitive DNA

2018
Mob DNA
PMCID: 5930866
PMID: 29743957
DOI: 10.1186/s13100-018-0120-9

[…] m their analysis, even though read mapping technologies have evolved or have been specifically designed to efficiently assay repetitive DNA from whole genome data. These tools include MELT, RetroSeq, EpiTEome and McClintock for TE insertion site identification [–], T-lex to identify presence/absence of TE copies [], Clari-TE to resolve nested TE structure [], TEtoolkit/TEtranscripts for TE enrichm […]


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EpiTEome institution(s)
Department of Molecular Genetics, The Ohio State University, Columbus, OH, USA
EpiTEome funding source(s)
Supported by the Ohio Supercomputer Center and the U.S. National Science Foundation grant MCB-1252370.

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