EpiToolKit statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

EpiToolKit specifications


Unique identifier OMICS_07594
Name EpiToolKit
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.0
Stability Stable
Maintained No


This tool is not available anymore.

Publications for EpiToolKit

EpiToolKit in publications

PMCID: 5899330
PMID: 29653567
DOI: 10.1186/s12885-018-4325-6

[…] in a patient-specific manner [–]. with little variation, these are the criteria applied by all computational tools for neoepitope prediction from tumor genomic sequencing data, including epi-seq [], epitoolkit [], pvac-seq [], integrate-neo [], tsnad [], mupexi [], and cloudneo []., our central assertion is that the immunogenicity of a neoepitope is directly related to its novelty: that is, […]

PMCID: 4728757
PMID: 26813686
DOI: 10.1186/s13073-016-0263-6

[…] []. the model was implemented in python 2.7 using pyomo 4.0 [] and solved with ilog cplex 12.5 (www.ilog.com) and the lin–kernighan–helsgaun heuristic []. the complete framework was integrated into epitoolkit, a web-based platform for rational vaccine design. it can be accessed at www.epitoolkit.de under spacer design []. the source code and example files can be found […]

PMCID: 4654883
PMID: 26589500
DOI: 10.1186/s13073-015-0245-0

[…] integrating a larger number of algorithms into convenient scripting languages such as python []. furthermore, graphical workflow engines such as galaxy [] do not require programming skills. epitoolkit 2.0, for example, offers an immunoinformatics workbench with a wide range of functionalities in a single coherent graphical user interface []., the advent of high-throughput methods […]

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EpiToolKit institution(s)
Center for Bioinformatics, University of Tübingen, Tübingen, Germany

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