EpiToolKit statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left MHC class II epitope prediction Epitope assembly chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

EpiToolKit specifications

Information


Unique identifier OMICS_07594
Name EpiToolKit
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.0
Stability Stable
Maintained No

Maintainer


This tool is not available anymore.

Publications for EpiToolKit

EpiToolKit in publications

 (3)
PMCID: 5899330
PMID: 29653567
DOI: 10.1186/s12885-018-4325-6

[…] in a patient-specific manner [–]. with little variation, these are the criteria applied by all computational tools for neoepitope prediction from tumor genomic sequencing data, including epi-seq [], epitoolkit [], pvac-seq [], integrate-neo [], tsnad [], mupexi [], and cloudneo []., our central assertion is that the immunogenicity of a neoepitope is directly related to its novelty: that is, […]

PMCID: 4728757
PMID: 26813686
DOI: 10.1186/s13073-016-0263-6

[…] []. the model was implemented in python 2.7 using pyomo 4.0 [] and solved with ilog cplex 12.5 (www.ilog.com) and the lin–kernighan–helsgaun heuristic []. the complete framework was integrated into epitoolkit, a web-based platform for rational vaccine design. it can be accessed at www.epitoolkit.de under spacer design []. the source code and example files can be found […]

PMCID: 4654883
PMID: 26589500
DOI: 10.1186/s13073-015-0245-0

[…] integrating a larger number of algorithms into convenient scripting languages such as python []. furthermore, graphical workflow engines such as galaxy [] do not require programming skills. epitoolkit 2.0, for example, offers an immunoinformatics workbench with a wide range of functionalities in a single coherent graphical user interface []., the advent of high-throughput methods […]


To access a full list of publications, you will need to upgrade to our premium service.

EpiToolKit institution(s)
Center for Bioinformatics, University of Tübingen, Tübingen, Germany

EpiToolKit reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review EpiToolKit