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Epitope assembly software tools | Immunoinformatics

Assembles a set of epitopes into an optimal string-of-beads polypeptide vaccine construct. It consumes a peptide list and generates a traveling salesman problem (TSP) instance as described in (Toussaint et al., 2011). Each node of the underlying…
FRED
Desktop

FRED FRamework for Epitope Detection

A versatile immunoinformatics software framework enabling a unified interface…

A versatile immunoinformatics software framework enabling a unified interface to many tools, from epitope prediction, HLA typing, to epitope selection and assembly. Its openness and easy…

EpiToolKit
Web

EpiToolKit

A virtual workbench for immunological questions with a focus on vaccine design.…

A virtual workbench for immunological questions with a focus on vaccine design. EpiToolKit offers an array of immunoinformatics tools covering MHC genotyping, epitope and neo-epitope prediction,…

ImmunoNodes
Desktop

ImmunoNodes

Permits to build complex workflows. ImmunoNodes is integrated in KNIME that…

Permits to build complex workflows. ImmunoNodes is integrated in KNIME that provides a way to predict Human Leukocyte Antigen (HLA) binding, HLA class I antigen processing, HLA genotyping, as well as…

Create Epitome
Web
Desktop

Create Epitome

Models genetic diversity by summarizing a large input dataset into an epitome,…

Models genetic diversity by summarizing a large input dataset into an epitome, a short sequence capturing many overlapping subsequences from the dataset. Create Epitome is an interactive program…

PolyCTLDesigner
Desktop

PolyCTLDesigner

A program that is intended for constructing polyepitope immunogens. Given a set…

A program that is intended for constructing polyepitope immunogens. Given a set of either known or predicted T-cell epitopes the program selects N-terminal flanking sequences for each epitope to…

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