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Epitopia specifications

Information


Unique identifier OMICS_04197
Name Epitopia
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Epitopia

Epitopia in publications

 (17)
PMCID: 5857718
PMID: 29560474
DOI: 10.1016/j.heliyon.2018.e00564

[…] was analyzed using a protein folding method with abalone software, which was further refined via yasara force field and molecular repairing using a foldx method. immunogenicity was examined with epitopia software, whereas allergen properties were tested using algpred. the pattern of the tandem epitope binding with anti-gp350/220 antibodies was performed using z-dock and snugdock. the tandem […]

PMCID: 5763123
PMID: 29445754
DOI: 10.1155/2017/2680160

[…] seppa reached an auc of 0.62 while all the mentioned methods had an auc around 0.5 []. ml has also been applied to predict conformational b-cell epitopes in 3d-structures. relevant examples include epitopia [] and epsvr [] which are based on naïve bayes classifiers and support vector regressions, respectively, trained on feature vectors combining different scores. the reported auc of these two […]

PMCID: 5227168
PMID: 28127568
DOI: 10.1155/2016/6760830

[…] of 0.732) outperforms structure-based methods cep and discotope. ellipro enables visualization of linear and discontinuous epitopes on the protein 3d structure []., computational prediction tool epitopia employs naïve bayes classifier to predict epitopes in linear sequence or 3d structure. it distinguishes the nonepitope and epitope regions by computing an immunogenicity score (reflecting […]

PMCID: 5124729
PMID: 27965660
DOI: 10.3389/fimmu.2016.00469

[…] patterns, we will continue our analyses to identify new epitopes. the hlamatchmaker website www.epitopes.net (formerly www.hlamatchmaker.net) has now a downloadable excel document “five maps of hla epitopia,” which describes the sequence locations of antibody-verified eplets and polymorphic residues as potential candidates defining additional epitopes. these maps can be used in navigating […]

PMCID: 4935990
PMID: 27384324
DOI: 10.1038/srep29400

[…] predicted both linear and conformational epitopes of the capsid protein (vp1) in the standard strains of each genotype. linear epitopes were predicted by combination analysis with seven tools: leps, epitopia, bcpred, fbcpred, bepipred, antigenic, and lbtope, according to a previous report. gii.6 and gii.12 could not be analyzed. the protein sequences of gii.6 (accession no. aj277620) and gii.12 […]


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Epitopia institution(s)
Department of Cell Research and Immunology, George S Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel

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