EpiTracer specifications

Information


Unique identifier OMICS_17772
Name EpiTracer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data For computing epicenters: a tab delimited file with 3 columns (source, target and weight of edge), “disease_network”, “compute_cshan?” and “percentile_threshold”. For extracting immediate influence zone and highlighting dysregulated genes: network from which to extract influence zone, nodes around which to extract influence zone, node weights, fold change, control-specific highest activity network, disease-specific highest activity network, upstream limit, downstream limit and fold change limit.
Output data For extracting immediate influence zone and highlighting dysregulated genes: immediate influence zone (edges) around each epicenter, node information of immediate influence zone for each epicenter, the table similar to table 1 in the paper and summary statistics of each influence zone.
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

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  • person_outline Nagasuma Chandra <>

EpiTracer article

EpiTracer institution(s)
IISc Mathematics Initiative, Indian Institute of Science, Bangalore, India; Department of Biochemistry, Indian Institute of Science, Bangalore, India

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