Epiviz specifications

Information


Unique identifier OMICS_12439
Name Epiviz
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 4.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Hector Corrada Bravo <>

Information


Unique identifier OMICS_12439
Name Epiviz
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 2.10.0
Stability Stable
Requirements
methods
Maintained Yes

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Maintainer


  • person_outline Hector Corrada Bravo <>

Publications for Epiviz

Epiviz in publications

 (3)
PMCID: 5921565
PMID: 29699480
DOI: 10.1186/s12859-018-2160-z

[…] tools such as genome browsers are able to properly visualize these specialized data sets. current genome browsers such as ucsc genome browser [], annoj [], igv [], washu epigenome browser [], epiviz [], igb [], and jbrowse [], have limited capability to visualize these data sets effectively, hindering the visualization and potential discoveries with new sequencing technologies. jbrowse […]

PMCID: 4980799
PMID: 27510908
DOI: 10.1186/s12942-016-0059-3

[…] of local vaccination strategies. the results show that a proper spatial–social scale can help achieve the best control efficacy with a limited number of vaccines., the case study shows how gs-epiviz does support the design and testing of advanced control scenarios in airborne disease (e.g., influenza). the geo-social patterns identified through exploring human interaction data can help […]

PMCID: 4945830
PMID: 26463000
DOI: 10.1093/bib/bbv080

[…] enables inspection of specific cancer genomic loci or the general overview of genomic alterations, the exploration of cause–effect relationships between various alteration types. most recently, the epiviz genome browser [] provides both a web-based interface and full integration with bioconductor and its core data classes through the ‘epivizr' package. visualization tools tied to genomic […]


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Epiviz institution(s)
Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA; University of Maryland Institute of Advanced Computer Studies, University of Maryland, College Park, College Park, MD, USA; Department of Computer Science, University of Maryland, College Park, College Park, MD, USA
Epiviz funding source(s)
Supported by the grant funded by the National Institutes of Health [R01GM114267].

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