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EPMeta specifications

Information


Unique identifier OMICS_04205
Name EPMeta
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for EPMeta

EPMeta in publications

 (7)
PMCID: 5227168
PMID: 28127568
DOI: 10.1155/2016/6760830

[…] with support vector regression server (epsvr) employs vector regression to integrate same scores as are combined in epces and achieves auc value of 0.597. epsvr is integrated in metaserver epmeta together with five existing prediction servers (epces, epitopia, seppa, pepito, and discotope 1.2) and provides consensus prediction results. the performance of epmeta is auc value of 0.6, […]

PMCID: 4654883
PMID: 26589500
DOI: 10.1186/s13073-015-0245-0

[…] been developed. a good review, including a benchmark, for discontinuous epitopes was published by yao and colleagues in 2013 []. yao et al. tested predictions based on antigen protein structures. epmeta [] achieved the best auc (0.638) for conformational b-cell epitope prediction and an overall accuracy of 25.6 %. all other predictors had aucs lower than 0.6 and an accuracy worse than 25 %. […]

PMCID: 4526569
PMID: 26244562
DOI: 10.1371/journal.pone.0134835

[…] et al. [] utilizes the random forest model, while liu and hu [] uses logistic regression with b-factors and the relative accessible surface area as inputs. bepar is an association patterns model []. epmeta is a consensus model []. epitopia [, ] utilizes the naïve bayes model, fusing physicochemical and structural-geometrical properties from a surface patch., although many methods are proposed, […]

PMCID: 4719070
PMID: 25971595
DOI: 10.1093/bib/bbv027

[…] any antibody information (e.g. cep [], discotope [, ], ellipro [, ], pepito [], pepop [], seppa [, ], epitopia [] and others [, ]). consensus-based methods such as epces [] or the meta-server epsvr/epmeta [] are currently among the best-performing algorithms in this area []., the main aim of methods that use no antibody information is to identify epitope-like sites on proteins as a means […]

PMCID: 4083607
PMID: 25045691
DOI: 10.1155/2014/689219

[…] regression with residue properties and half sphere exposure values. epsvr [] built a support vector regression model with epitope propensity scores and some other epitope discriminative features. epmeta [] was a metamethod which combined the predicted results from existing web tools to produce the final results. in [], zhang et al. introduced the “thick surface patch” to consider the impact […]


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EPMeta institution(s)
Jacobs University Bremen, Germany

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