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Citations per year

Number of citations per year for the bioinformatics software tool ePoPe

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ePoPe specifications


Unique identifier OMICS_29781
Name ePoPe
Alternative name efficient Prediction of Paralog Evolution
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data An alignment file, a tree file and a weigh array file.
Operating system Unix/Linux
Programming languages C
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes




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  • person_outline Jana Hertel

ePoPe citations


Neurodevelopmental outcome at 2 years for preterm children born at 22 to 34 weeks’ gestation in France in 2011: EPIPAGE 2 cohort study

PMCID: 5558213
PMID: 28814566
DOI: 10.1136/bmj.j3448

[…] ed as the highest occupational status of the mother and father, or mother only if a single parent, small for gestational age as birth weight <10th centile for gestational age and sex based on French “EPOPé” intrauterine growth curves, and severe neonatal morbidities as severe bronchopulmonary dysplasia, necrotising enterocolitis (Bell stages 2-3), severe retinopathy of prematurity stage >3, or any […]


Impact of preterm birth on infant mortality for newborns with congenital heart defects: The EPICARD population based cohort study

PMCID: 5433049
PMID: 28506266
DOI: 10.1186/s12887-017-0875-z

[…] obert Debré, AP-HP, Service de biologie du Développement, Université Paris-Diderot, Paris).François Goffinet (Groupe Hospitalier Cochin-Hôtel Dieu, AP-HP, Maternité Port-Royal et INSERM U1153, Equipe EPOPé, Université Paris Descartes, Paris).Lucile Houyel (Hôpital Marie Lannelongue, Service de chirurgie des cardiopathies congénitales, Le Plessis-Robinson).Jean-Marie Jouannic (Hôpital Trousseau, AP […]


Phylogenetic distribution of plant snoRNA families

BMC Genomics
PMCID: 5122169
PMID: 27881081
DOI: 10.1186/s12864-016-3301-2

[…] cies. SnoRNA clusters were identified by proximities of genomic coordinates.The history of gains and losses in each snoRNA family was reconstructed using a Dollo parsimony approach implemented in the ePoPe programm [].Since the nomenclature of plant snoRNAs only partially respects known or detectable sequence homology we used a unique internal family identifier throughout this study. These identif […]


The Expansion of Animal MicroRNA Families Revisited

PMCID: 4390885
PMID: 25780960
DOI: 10.3390/life5010905
call_split See protocol

[…] Our newly developed software, ePoPE, provides a C implementation of the algorithm outlined in . It is designed specifically for the analysis of gene family data, which are usually available in the form of sequence alignments obtai […]

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