ePoPe statistics
ePoPe specifications
Information
Unique identifier | OMICS_29781 |
---|---|
Name | ePoPe |
Alternative name | efficient Prediction of Paralog Evolution |
Software type | Application/Script |
Interface | Command line interface |
Restrictions to use | None |
Input data | An alignment file, a tree file and a weigh array file. |
Operating system | Unix/Linux |
Programming languages | C |
License | GNU General Public License version 3.0 |
Computer skills | Advanced |
Version | 2.0 |
Stability | Stable |
Maintained | Yes |
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- person_outline Jana Hertel <>
ePoPe in publications
(2)Phylogenetic distribution of plant snoRNA families
[…] act as precursor molecules for the production of small regulatory rnas []. fig. 5 , to draw a comprehensive picture of the snorna evolution in the 24 plant species we used the compational approach epope []. it implements a parsimony-based presence/absence analysis of genes within a gene family. given the phylogenetic tree of our plants of interest and the built alignments this program […]
The Expansion of Animal MicroRNA Families Revisited
[…] by backtracing. the edges at which mirna families go extinct are those for which the parent has k > 0 and the child has k = 0 in the most parsimonious solution., our newly developed software, epope, provides a c implementation of the algorithm outlined in . it is designed specifically for the analysis of gene family data, which are usually available in the form of sequence alignments […]
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