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ePoPe specifications
Information
| Unique identifier | OMICS_29781 |
|---|---|
| Name | ePoPe |
| Alternative name | efficient Prediction of Paralog Evolution |
| Software type | Application/Script |
| Interface | Command line interface |
| Restrictions to use | None |
| Input data | An alignment file, a tree file and a weigh array file. |
| Operating system | Unix/Linux |
| Programming languages | C |
| License | GNU General Public License version 3.0 |
| Computer skills | Advanced |
| Version | 2.0 |
| Stability | Stable |
| Maintained | Yes |
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- person_outline Jana Hertel <>
ePoPe in publications
(2)Phylogenetic distribution of plant snoRNA families
[…] act as precursor molecules for the production of small regulatory rnas []. fig. 5 , to draw a comprehensive picture of the snorna evolution in the 24 plant species we used the compational approach epope []. it implements a parsimony-based presence/absence analysis of genes within a gene family. given the phylogenetic tree of our plants of interest and the built alignments this program […]
The Expansion of Animal MicroRNA Families Revisited
[…] by backtracing. the edges at which mirna families go extinct are those for which the parent has k > 0 and the child has k = 0 in the most parsimonious solution., our newly developed software, epope, provides a c implementation of the algorithm outlined in . it is designed specifically for the analysis of gene family data, which are usually available in the form of sequence alignments […]
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