ePoPe statistics

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ePoPe specifications

Information


Unique identifier OMICS_29781
Name ePoPe
Alternative name efficient Prediction of Paralog Evolution
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data An alignment file, a tree file and a weigh array file.
Operating system Unix/Linux
Programming languages C
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Jana Hertel <>

ePoPe in publications

 (2)
PMCID: 5122169
PMID: 27881081
DOI: 10.1186/s12864-016-3301-2

[…] act as precursor molecules for the production of small regulatory rnas []. fig. 5 , to draw a comprehensive picture of the snorna evolution in the 24 plant species we used the compational approach epope []. it implements a parsimony-based presence/absence analysis of genes within a gene family. given the phylogenetic tree of our plants of interest and the built alignments this program […]

PMCID: 4390885
PMID: 25780960
DOI: 10.3390/life5010905

[…] by backtracing. the edges at which mirna families go extinct are those for which the parent has k > 0 and the child has k = 0 in the most parsimonious solution., our newly developed software, epope, provides a c implementation of the algorithm outlined in . it is designed specifically for the analysis of gene family data, which are usually available in the form of sequence alignments […]


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