eQTL Browser protocols

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eQTL Browser specifications

Information


Unique identifier OMICS_05304
Name eQTL Browser
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

eQTL Browser in pipeline

2013
PMCID: 3832895
PMID: 24076602
DOI: 10.1038/ng.2770

[…] variants with information about evolutionary conservation, predicted coding consequence, regulation, published associations to expression or dnase i hypersensitive sites using annovar, vep, and the eqtl browser, a recent immune cell expression study, and other literature., to determine the go processes for which our associated variants were involved, we used metacore from thomson reuters. […]


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eQTL Browser in publications

 (99)
PMCID: 5932181
PMID: 29755505
DOI: 10.3389/fgene.2018.00139

[…] mirsnps that might affect expression levels of the reported disease-associated genes, we intersected our results with publicly available eqtl data from the gtex project (lonsdale et al., ), blood eqtl browser (westra et al., ), and the geuvadis project (lappalainen et al., ) (supplementary table )., we found 34 mirsnps that may alter the binding sites of 86 mirnas predicted to target mrnas […]

PMCID: 5890276
PMID: 29632299
DOI: 10.1038/s41467-018-03178-z

[…] (supplementary data ). eqtl analysis was performed by testing each sentinel snp with genes 1mb upstream and downstream using the whole blood tissue data available from gtex portal v6p and blood eqtl browser (supplementary data ). methylation quantitative trait loci (mqtl) for all known bcp-all risk loci where assessed using the mqtl database (www.mqtldb.org), which shows the presence […]

PMCID: 5886383
PMID: 29621232
DOI: 10.1371/journal.pgen.1007275

[…] factors in pancreatic islets and the pancreas., we searched the following publicly available eqtl databases to identify cis-eqtls at the observed loci: gtex v7 [], the university of chicago eqtl browser [], the islet eqtl explorer (http://theparkerlab.org/tools/isleteqtl/) [], and the blood eqtl browser []. we also searched for cis-eqtls in subcutaneous adipose tissue from the metsim […]

PMCID: 5859892
PMID: 29588580
DOI: 10.2147/COPD.S151153

[…] is also expressed in lymphoblastoid cells, and it is interesting to know whether this variant is correlated with the expression of adrb2 in lymphoblastoid cells. to address this issue, we utilized eqtl browser (http://eqtl.uchicago.edu/cgi-bin/gbrowse/eqtl/), which collected published eqtl data of lymphoblastoid cell lines (lcl) from four hapmap populations to search for potential association. […]

PMCID: 5834468
PMID: 29500382
DOI: 10.1038/s41467-018-03242-8

[…] these snps show a significant eqtl association (i.e., allelic variation at the snp affects the expression of that gene). this strategy is based on information from 3 data repositories (gtex, blood eqtl browser, and bios qtl browser), and uses cis-eqtls, which can map snps to genes that lie up to 1 mb apart. we applied a false discovery rate (fdr) of 0.05 to define significant eqtl […]


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