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eQTL Browser specifications


Unique identifier OMICS_05304
Name eQTL Browser
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

eQTL Browser citations


Integrative Analysis Identifies Genetic Variants Associated With Autoimmune Diseases Affecting Putative MicroRNA Binding Sites

PMCID: 5932181
PMID: 29755505
DOI: 10.3389/fgene.2018.00139

[…] mirsnps that might affect expression levels of the reported disease-associated genes, we intersected our results with publicly available eqtl data from the gtex project (lonsdale et al., ), blood eqtl browser (westra et al., ), and the geuvadis project (lappalainen et al., ) (supplementary table )., we found 34 mirsnps that may alter the binding sites of 86 mirnas predicted to target mrnas […]


Genome wide association study identifies susceptibility loci for B cell childhood acute lymphoblastic leukemia

PMCID: 5890276
PMID: 29632299
DOI: 10.1038/s41467-018-03178-z

[…] (supplementary data ). eqtl analysis was performed by testing each sentinel snp with genes 1mb upstream and downstream using the whole blood tissue data available from gtex portal v6p and blood eqtl browser (supplementary data ). methylation quantitative trait loci (mqtl) for all known bcp-all risk loci where assessed using the mqtl database (www.mqtldb.org), which shows the presence […]


Identification and functional analysis of glycemic trait loci in the China Health and Nutrition Survey

PMCID: 5886383
PMID: 29621232
DOI: 10.1371/journal.pgen.1007275

[…] factors in pancreatic islets and the pancreas., we searched the following publicly available eqtl databases to identify cis-eqtls at the observed loci: gtex v7 [], the university of chicago eqtl browser [], the islet eqtl explorer (http://theparkerlab.org/tools/isleteqtl/) [], and the blood eqtl browser []. we also searched for cis-eqtls in subcutaneous adipose tissue from the metsim […]


A functional SNP upstream of the ADRB2 gene is associated with COPD

PMCID: 5859892
PMID: 29588580
DOI: 10.2147/COPD.S151153

[…] is also expressed in lymphoblastoid cells, and it is interesting to know whether this variant is correlated with the expression of adrb2 in lymphoblastoid cells. to address this issue, we utilized eqtl browser (http://eqtl.uchicago.edu/cgi-bin/gbrowse/eqtl/), which collected published eqtl data of lymphoblastoid cell lines (lcl) from four hapmap populations to search for potential association. […]


Item level analyses reveal genetic heterogeneity in neuroticism

PMCID: 5834468
PMID: 29500382
DOI: 10.1038/s41467-018-03242-8

[…] these snps show a significant eqtl association (i.e., allelic variation at the snp affects the expression of that gene). this strategy is based on information from 3 data repositories (gtex, blood eqtl browser, and bios qtl browser), and uses cis-eqtls, which can map snps to genes that lie up to 1 mb apart. we applied a false discovery rate (fdr) of 0.05 to define significant eqtl […]


Diffuse gliomas classified by 1p/19q co deletion, TERT promoter and IDH mutation status are associated with specific genetic risk loci

PMCID: 5904227
PMID: 29460007
DOI: 10.1007/s00401-018-1825-z

[…] of diagnosis., we searched for expression quantitative trait loci (eqtls) in 10 brain regions using the v6p gtex [] portal (https://gtexportal.org/home/) as well as in whole blood using the blood eqtl browser [] (https://molgenis58.target.rug.nl/bloodeqtlbrowser/)., we examined for significant contacts between glioma risk snps and nearby genes using the hugin browser [], which is based […]

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