eqtl.uchicago.edu statistics

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eqtl.uchicago.edu specifications

Information


Unique identifier OMICS_17655
Name eqtl.uchicago.edu
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


eqtl.uchicago.edu in publications

 (85)
PMCID: 5859892
PMID: 29588580
DOI: 10.2147/COPD.S151153

[…] lymphoblastoid cells, and it is interesting to know whether this variant is correlated with the expression of adrb2 in lymphoblastoid cells. to address this issue, we utilized eqtl browser (http://eqtl.uchicago.edu/cgi-bin/gbrowse/eqtl/), which collected published eqtl data of lymphoblastoid cell lines (lcl) from four hapmap populations to search for potential association. interestingly, […]

PMCID: 5572396
PMID: 28835372
DOI: 10.15252/msb.20177548

[…] for functional links between genes., rna‐sequencing data for human lymphoblastoid cell lines (lcls) have been reported (pickrell et al, ). counts per mapped reads were downloaded from http://eqtl.uchicago.edu and converted to log2 “reads per kilobase transcript per million mapped reads” (rpkms). genes expressed in < 30 lcls were removed. in order to make mrna measurements comparable […]

PMCID: 5520018
PMID: 28714469
DOI: 10.1038/ncomms16021

[…] was computed using the ceu (for ea and ha) or yri (for aa) data with an r2≥0.5 for tier 1 and 2 snps. snps and their proxies were then queried in a data set downloaded from the eqtl browser (http://eqtl.uchicago.edu/cgi-bin/gbrowse/eqtl/; pritchard lab, university of chicago) and the gtex portal (http://www.gtexportal.org). the eqtl browser contains eqtl data surveyed from 17 eqtl studies, […]

PMCID: 5449482
PMID: 28620303
DOI: 10.3389/fphar.2017.00323

[…] support., we thank the clinicians and research nurses involved in recruiting the patients., https://www.mysequenom.com/tools , http://cran.r-project.org/web/packages/genetics/index.html , http://eqtl.uchicago.edu/cgi-bin/gbrowse/eqtl/ , the supplementary material for this article can be found online at: […]

PMCID: 5414044
PMID: 28443625
DOI: 10.1038/ncomms14977

[…] cell tissue eqtls (for example, adipose and brain tissues). additional eqtl data was integrated from online sources including scandb, the broad institute gtex portal, and the pritchard lab (eqtl.uchicago.edu). additional details on the methods, including study references can be found in . only significant cis-eqtls in high ld with our novel lead snps (r2>0.9, calculated […]


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