eQTLseq statistics

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Associated diseases

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eQTLseq specifications

Information


Unique identifier OMICS_18849
Name eQTLseq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License MIT License
Computer skills Advanced
Stability Stable
Source code URL https://codeload.github.com/dvav/eQTLseq/tar.gz/v2017.5.28
Maintained Yes

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Maintainer


  • person_outline Dimitrios Vavoulis <>

Publication for eQTLseq

eQTLseq in pipeline

2017
PMCID: 5637939
PMID: 28575251
DOI: 10.1093/bioinformatics/btx355

[…] are functions of the genotypes x, the expression data zk for transcript k, the precision parameters τk, ζk and η and a vector ωk of auxiliary parameters, which follow a polya-gamma distribution., eqtlseq requires appropriately transformed expression data as input, when a normal model is selected. in this paper, we examine various data transformation methods, including a simple logarithmic […]


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eQTLseq in publication

PMCID: 5637939
PMID: 28575251
DOI: 10.1093/bioinformatics/btx355

[…] these results provide strong support for transformation-based versus count-based (particularly negative-binomial-based) models for eqtl mapping., all methods are implemented in the free software eqtlseq: https://github.com/dvav/eqtlseq, [email protected] , are available at bioinformatics online., the identification of genetic variants affecting gene expression (known […]


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eQTLseq institution(s)
The Nuffield Division of Clinical Laboratory Sciences, University of Oxford, Oxford, UK; The Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK; National Health Service Translational Molecular Diagnostics Centre, Oxford University Hospitals, John Radcliffe Hospital, Oxford, UK; National Institute for Health Research Oxford Biomedical Research Centre, Oxford, UK; Department of Oncology, University of Oxford, Oxford, UK
eQTLseq funding source(s)
Supported by the National Institute for Health Research (NIHR) Oxford Biomedical Research Centre Program, and the Wellcome Trust Centre for Human Genetics Wellcome Trust Core Award Grant Number 090532/Z/09/Z.

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