eQuilibrator statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Thermodynamics chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

eQuilibrator specifications

Information


Unique identifier OMICS_06492
Name eQuilibrator
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability No
Maintained No

Versioning


Add your version

Information


Unique identifier OMICS_06492
Name eQuilibrator
Interface Web user interface
Restrictions to use None
Programming languages Javascript, Python
Computer skills Basic
Stability No
Maintained No

Publication for eQuilibrator

eQuilibrator in publications

 (50)
PMCID: 5841818
PMID: 29474500
DOI: 10.1371/journal.pcbi.1005982

[…] all reactions treat ph as a fixed entity throughout the course of the simulations. δg′0¯ was obtained primarily from the goldberg [], li [], and alberty [] databases, or calculated using the equilibrator [] server. δg′0¯ values can be found in . a monte carlo method was applied to randomly choose metabolite concentrations that were consistent with literature concentration boundaries […]

PMCID: 5766603
PMID: 29330441
DOI: 10.1038/s41467-017-02362-x

[…] \setlength{\oddsidemargin}{-69pt} \begin{document}$${\bbb n}_i$$\end{document}ni, (iii) formation energies of exchange metabolites that were calculated using component contribution method or equilibrator (at standard cellular conditions, ph 7.0, and ionic strength of 0.1 m) and stored as \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfo […]

PMCID: 5799877
PMID: 29257874
DOI: 10.1021/acs.est.7b05138

[…] (figure s3). water from a ∼0.5 m depth was pumped continuously (3 l min–1) through a prefilter and a cartridge filter (10 μm pore size, eaton lofwind) and was further led to a membrane-based equilibrator (permselect module pdms-xa 1.0, medarray inc.), composed of an array of silicone hollow fibers with a total exchange area of 1 m2. in this membrane-based equilibrator, the water flows […]

PMCID: 5727896
PMID: 29276507
DOI: 10.3389/fmicb.2017.02440

[…] both conditions and even exports it via omvs, presumably with the intention of providing the host with this amino acid., for all reactions added by fgf, reversibilities [initially calculated using equilibrator ()] were checked against their curated kegg reaction reversibilities. several were inconsistent and in these cases the curated reversibility was adopted in the model. this resulted […]

PMCID: 5713646
PMID: 29213330
DOI: 10.1186/s13068-017-0978-7

[…] carbon flux was reduced. analysis of the thermodynamics of each step revealed that butyryl-coa reduction to n-butyraldehyde is thermodynamically unfavorable with δg′° of 7.7 kj/mol (calculated using equilibrator []), which may lead to inefficient conversion of butyryl-coa to n-butyraldehyde, particularly after n-butyraldehyde concentration reached a certain threshold. it is likely […]


To access a full list of publications, you will need to upgrade to our premium service.

eQuilibrator institution(s)
Department of Plant Sciences, Weizmann Institute of Science, Rehovot, Israel

eQuilibrator reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review eQuilibrator