eQuilibrator statistics

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eQuilibrator specifications


Unique identifier OMICS_06492
Name eQuilibrator
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability No
Maintained No


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Unique identifier OMICS_06492
Name eQuilibrator
Interface Web user interface
Restrictions to use None
Programming languages Javascript, Python
Computer skills Basic
Stability No
Maintained No

Publication for eQuilibrator

eQuilibrator in publications

PMCID: 5841818
PMID: 29474500
DOI: 10.1371/journal.pcbi.1005982

[…] all reactions treat ph as a fixed entity throughout the course of the simulations. δg′0¯ was obtained primarily from the goldberg [], li [], and alberty [] databases, or calculated using the equilibrator [] server. δg′0¯ values can be found in . a monte carlo method was applied to randomly choose metabolite concentrations that were consistent with literature concentration boundaries […]

PMCID: 5766603
PMID: 29330441
DOI: 10.1038/s41467-017-02362-x

[…] \setlength{\oddsidemargin}{-69pt} \begin{document}$${\bbb n}_i$$\end{document}ni, (iii) formation energies of exchange metabolites that were calculated using component contribution method or equilibrator (at standard cellular conditions, ph 7.0, and ionic strength of 0.1 m) and stored as \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfo […]

PMCID: 5799877
PMID: 29257874
DOI: 10.1021/acs.est.7b05138

[…] (figure s3). water from a ∼0.5 m depth was pumped continuously (3 l min–1) through a prefilter and a cartridge filter (10 μm pore size, eaton lofwind) and was further led to a membrane-based equilibrator (permselect module pdms-xa 1.0, medarray inc.), composed of an array of silicone hollow fibers with a total exchange area of 1 m2. in this membrane-based equilibrator, the water flows […]

PMCID: 5727896
PMID: 29276507
DOI: 10.3389/fmicb.2017.02440

[…] both conditions and even exports it via omvs, presumably with the intention of providing the host with this amino acid., for all reactions added by fgf, reversibilities [initially calculated using equilibrator ()] were checked against their curated kegg reaction reversibilities. several were inconsistent and in these cases the curated reversibility was adopted in the model. this resulted […]

PMCID: 5713646
PMID: 29213330
DOI: 10.1186/s13068-017-0978-7

[…] carbon flux was reduced. analysis of the thermodynamics of each step revealed that butyryl-coa reduction to n-butyraldehyde is thermodynamically unfavorable with δg′° of 7.7 kj/mol (calculated using equilibrator []), which may lead to inefficient conversion of butyryl-coa to n-butyraldehyde, particularly after n-butyraldehyde concentration reached a certain threshold. it is likely […]

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eQuilibrator institution(s)
Department of Plant Sciences, Weizmann Institute of Science, Rehovot, Israel

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