ERaBLE statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ERaBLE
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Tool usage distribution map

This map represents all the scientific publications referring to ERaBLE per scientific context
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ERaBLE specifications

Information


Unique identifier OMICS_10977
Name ERaBLE
Alternative name Evolutionary Rates and Branch Length Estimation
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data ERaBLE requires at least two input files: one matrices file and one tree topology file.
Output data ERaBLE outputs two outfiles: (i) the topology in NEWICK format with the branch lengths computed by ERaBLE with the suffix ".lengths.nwk", (ii) the gene rates with the suffix ".rates.txt".
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Fabio Pardi

Publication for Evolutionary Rates and Branch Length Estimation

ERaBLE citations

 (5)
library_books

Comparative analysis of inverted repeats of polypod fern (Polypodiales) plastomes reveals two hypervariable regions

2017
BMC Plant Biol
PMCID: 5751766
PMID: 29297348
DOI: 10.1186/s12870-017-1195-z

[…] bour interchange was used. Distance matrices were calculated using baseml/codeml trees in the ape package []. Then relative evolution rate for each region (coding and non-coding) was calculated using ERaBLE []. Sliding window analysis (window = 200 b.p.) of p-distances, i.e. the proportion of nucleotide differences per site between sequences was calculated by perl script made by Masafumi Nozawa [] […]

library_books

Microbial fuel cells: From fundamentals to applications. A review

2017
PMCID: 5465942
PMID: 28717261
DOI: 10.1016/j.jpowsour.2017.03.109

[…] biofilm on the anode of the MFC was scraped and used to inoculate a new MFC . The power density of the second MFC had increased from 0.6 W m−2 to 4.3 W m−2 and the coulombic efficiency from 4 to 81%. Erable et al. used a biofilm collected under a floating metallic dock in a harbor . This wild biofilm, tested under chronoamperometry at −0.1 V vs. SCE on a graphite electrode and with acetate as a fu […]

library_books

New Curculionoidea (Coleoptera) records for Quebec, Canada

2017
Zookeys
PMCID: 5523881
PMID: 28769721
DOI: 10.3897/zookeys.681.12469

[…] ] East of St-Lambert-de-Lauzon, Rd. 218, 18VII2001, 46°36,133'N; 71°11.412'W, corn field with radish, Mason, Sarazin & Boudreault, QC 2001–110 (1, CNCI); same except: QC 2001–100 (1, CNCI); [MRC de l’Érable] NE of Plessisville, Road 116, 18VII2001, 46°18.796'N; 71°40.129'W, small canola field, Mason, Sarazin & Boudreault, QC 2001-330 (1, CNCI); [MRC Arthabaska] Saint-Albert, Hwy 122, 12VII2002, 46 […]

library_books

Possibilities for extremophilic microorganisms in microbial electrochemical systems

2015
FEMS Microbiol Rev
PMCID: 4802824
PMID: 26474966
DOI: 10.1093/femsre/fuv044

[…] ges for electricity production. These include diminished competition for substrate by methanogenesis (Gutierrez et al.) and at high pH, the lower anode potential results in an increased cell voltage (Erable, Etcheverry and Bergel ). During MFC operation, the anode becomes acidified while the cathode becomes more alkaline leading to a reduced cell voltage and power output. An acetate-fed, high curr […]

library_books

Marine sediments microbes capable of electrode oxidation as a surrogate for lithotrophic insoluble substrate metabolism

2015
Front Microbiol
PMCID: 4294203
PMID: 25642220
DOI: 10.3389/fmicb.2014.00784

[…] of oxygen reduction using electrons obtained from an electrode yielded members of the Betaproteobacteria, Gammaproteobacteria, and Bacteriodetes (Rabaey et al., ) or Actinobacteria and Flavobacteria (Erable et al., ). In neither group of isolates was the ability to use an insoluble substrate shown as these strains were grown heterotrophically and/or using hydrogen as the primary electron donor (Ra […]


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ERaBLE institution(s)
Laboratoire d’Informatique de Robotique et de Microélectronique de Montpellier (LIRMM), CNRS, Université de Montpellier, Montpellier, France; Institut de Biologie Computationnelle, Montpellier, France; Institut des Sciences de l’Evolution de Montpellier, CNRS, IRD, EPHE, Université de Montpellier, France
ERaBLE funding source(s)
The Labex NUMEV; the EC H2020 project VIROGENESIS (grant number 634650)

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