eRankPPI specifications

Information


Unique identifier OMICS_18385
Name eRankPPI
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0
Stability Stable
Maintained No

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Publication for eRankPPI

eRankPPI citation

library_books

Across proteome modeling of dimer structures for the bottom up assembly of protein protein interaction networks

2017
BMC Bioinformatics
PMCID: 5427563
PMID: 28499419
DOI: 10.1186/s12859-017-1675-z

[…] rder to more reliably identify near-native structures. Encouragingly, in 50.5% of the cases, at least one model having an IS-score higher than 0.473 is now found within the top 10 dimers re-ranked by eRankPPI. Further refinement with FiberDock increases this fraction to as high as 57.5%. In addition to the IS-score, Table  shows that success rates measured with iRMSD as well as PCS increase when e […]

eRankPPI institution(s)
Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA; Center for Computation & Technology, Louisiana State University, Baton Rouge, LA, USA
eRankPPI funding source(s)
Supported by the Louisiana Board of Regents through the Board of Regents Support Fund [contract LEQSF (2012–15)-RD-A-05].

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