ERD specifications

Information


Unique identifier OMICS_04760
Name ERD
Alternative name Evolutionary RNA Designer
Interface Web user interface
Restrictions to use None
Input data The folding method, the target structure, the constrain sequence, the maximum and minimum energy, the main-loop size, the rundom seed, the number of execution, the temperature, user’s e-mail address.
Input format TXT
Output data The sequence found by RNA designer, the corresponding minimal free energy structure, the distance to desired structure, the minimum free energy of the predicted structure in kcal/mol.
Biological technology Fluidigm Corporation
Programming languages C
Computer skills Basic
Stability Stable
Source code URL http://mostafa.ut.ac.ir/corna/erd-cons/erd-source.tar.gz
Maintained Yes

Documentation


Maintainer


  • person_outline Mohammad Ganjtabesh <>

Information


Unique identifier OMICS_04760
Name ERD
Alternative name Evolutionary RNA Designer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The folding method, the target structure, the constrain sequence, the maximum and minimum energy, the main-loop size, the rundom seed, the number of execution, the temperature.
Input format TXT
Output data The sequence found by RNA designer, the corresponding minimal free energy structure, the distance to desired structure, the minimum free energy of the predicted structure in kcal/mol.
Operating system Unix/Linux
Programming languages C
Computer skills Advanced
Version 2.0
Stability Stable
Source code URL http://mostafa.ut.ac.ir/corna/erd-cons/erd-source.tar.gz
Maintained Yes

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Versioning


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Documentation


Maintainer


  • person_outline Mohammad Ganjtabesh <>

Publications for Evolutionary RNA Designer

ERD institution(s)
Department of Computer Science, School of Mathematics, Statistics, and Computer Science, College of Science, University of Tehran, Tehran, Iran; Laboratoire d’Informatique (LIX), Ecole Polytechnique, Palaiseau, France
ERD funding source(s)
This work was supported by NSF DMS-1016618.

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