ERDS-pe specifications

Information


Unique identifier OMICS_22080
Name ERDS-pe
Alternative name Estimation by Read Depth with Singlenucleotide variants from Pooled Exome sequencing data
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format BAM,BED,VCF
Output data A tab-delimited file with CNVs
Operating system Unix/Linux
Computer skills Advanced
Version 1.0
Stability Stable
Requirements Numpy, PyVCF, Pysam
Maintained Yes

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Maintainers


  • person_outline Yadong Wang <>
  • person_outline Renjie Tan <>
  • person_outline Qinghua Jiang <>

Publication for Estimation by Read Depth with Singlenucleotide variants from Pooled Exome sequencing data

ERDS-pe institution(s)
School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China; School of Software, Harbin Institute of Technology, Harbin, China; School of Life Science and Technology, Harbin Institute of Technology, Harbin, China; Department of Mathematics Harbin Institute of Technology, Harbin, China
ERDS-pe funding source(s)
Supported by the National Natural Science Foundation of China (No: 61571152), the National High-tech R&D Program of China (863 Program) [Nos: 2012AA02A601, 2014AA021505, 2015AA020101, 2015AA020108], the National Science and Technology Major Project [No: 2013ZX03005012] and the Major State Research Development Program of China [No: 2016YFC1202302].

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