eRNA specifications

Information


Unique identifier OMICS_07012
Name eRNA
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Programming languages Perl
License GNU General Public License version 2.0
Computer skills Medium
Version 1.01
Stability Stable
Maintained Yes

Versioning


No version available

Publication for eRNA

eRNA citations

 (2)
library_books

Toward reliable biomarker signatures in the age of liquid biopsies how to standardize the small RNA Seq workflow

2016
Nucleic Acids Res
PMCID: 5291277
PMID: 27317696
DOI: 10.1093/nar/gkw545

[…] he software provides comprehensive manuals and tutorials, scientists not already familiar with command line tools may want to try a more intuitively usable software suite, in particular Galaxy (–) or eRNA (), which implement many of the tools discussed here in a user-friendly graphical interface or invest in commercially distributed programs such as CLC Genomics Workbench (Qiagen), Ingenuity Pathw […]

library_books

Plasma extracellular RNA profiles in healthy and cancer patients

2016
Sci Rep
PMCID: 4726401
PMID: 26786760
DOI: 10.1038/srep19413

[…] The RNA-seq analytical pipeline eRNA (v1.2) was developed for data analysis, including extraction of raw data, 3′ adaptor trimming, sequence alignment, and read count scaling. We applied an iterative alignment strategy: unmapped seq […]

eRNA institution(s)
Department of Pathology and MCW Cancer Center, Medical College of Wisconsin, Milwaukee WI, USA

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