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ESIprot specifications

Information


Unique identifier OMICS_27830
Name ESIprot
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input data Some peak data.
Operating system Unix/Linux, Mac OS
Programming languages Python
License GNU General Public License version 3.0
Computer skills Medium
Version 1.1
Stability Stable
Maintained Yes

Download


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Versioning


No version available

Maintainer


  • person_outline Robert Winkler

Additional information


https://bitbucket.org/lababi/esiprot

Publication for ESIprot

ESIprot citations

 (4)
library_books

Structural Basis for Redox Regulation of Cytoplasmic and Chloroplastic Triosephosphate Isomerases from Arabidopsis thaliana

2016
Front Plant Sci
PMCID: 5138414
PMID: 27999583
DOI: 10.3389/fpls.2016.01817

[…] file format using ProteoWizard (Kessner et al., ). The sum spectra were visualized in TOPPView (Sturm et al., ), a Gaussian noise filter (5 Da width) was applied to smooth the signals. MASSyPup64 and ESIprot were used as data processing platforms (Winkler, , ). […]

library_books

A new tool for the chemical genetic investigation of the Plasmodium falciparum Pfnek 2 NIMA related kinase

2016
Malar J
PMCID: 5100313
PMID: 27821169
DOI: 10.1186/s12936-016-1580-3

[…] 0 ms and the AGC target setting was 3e4. Protein charge-state distributions were viewed using the Xcalibur program (version 2.1.0.1139, Thermo Scientific) and molecular weight calculations made using ESIprot []. […]

library_books

Unraveling Cholesterol Catabolism in Mycobacterium tuberculosis: ChsE4 ChsE5 α2β2 Acyl CoA Dehydrogenase Initiates β Oxidation of 3 Oxo cholest 4 en 26 oyl CoA

2015
PMCID: 4489319
PMID: 26161441
DOI: 10.1021/id500033m

[…] luoroacetic acid. MS spectra were collected in ESI positive ion mode with a cone voltage of 40 V, a capillary voltage of 4.5 kV, and a source temperature of 150 °C. MS spectra were deconvoluted using ESIprot 1.0, and peaks in the UV (280 nm) were integrated using R. The integrated peak areas of each protein were divided by the corresponding molar extinction coefficient for the protein to yield the […]

library_books

A Distinct MaoC like Enoyl CoA Hydratase Architecture Mediates Cholesterol Catabolism in Mycobacterium tuberculosis

2014
ACS Chem Biol
PMCID: 4245171
PMID: 25203216
DOI: 10.1021/cb500232h

[…] ifluoroacetic acid. MS spectra were collected in ESI positive ion mode with a cone voltage of 40 V, a capillary voltage of 4.5 kV, and source temperature of 150 °C. MS spectra were deconvoluted using ESIprot 1.0, and peaks in the UV 280 nm chromatograms were integrated using R. The integrated peak areas of each protein were divided by the corresponding molar extinction coefficient for the protein […]

Citations

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ESIprot institution(s)
Tecnologico de Monterrey (ITESM), Department of Biotechnology and Food Engineering, Monterrey, Mexico
ESIprot funding source(s)
Supported by the Research Chair of Bioengineering and Nano-bioparticles (Grant CAT 161).

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