ESLpred specifications

Information


Unique identifier OMICS_06614
Name ESLpred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Maintainer


Publications for ESLpred

ESLpred in publications

 (25)
PMCID: 5924525
PMID: 29597290
DOI: 10.3390/genes9040183

[…] tree []. the statistical significance for each tree node was determined by bootstrap analysis using 100 replicates []., the subcellular localization was analyzed in silico using bacello [], eslpred [], yloc [], psort ii [], loctree3 [], wolf psort [], plant-mploc [], and cello []. the ncbi database was used to retrieve a 1500-bp dna sequence from the 5′-upstream region of each alba […]

PMCID: 5399554
PMID: 28288970
DOI: 10.1242/bio.023119

[…] to exit phagosomes (). fig. 1., given the massive export of cpn60.2 beyond mycobacterial phagosome, we consulted the web servers slpfa (http://sunflower.kuicr.kyoto-u.ac.jp/~tamura/slpfa.html) and eslpred (http://www.imtech.res.in/raghava/eslpred/) to define its destinations. slpfa and eslpred are frequently consulted for automated prediction of protein subcellular localization () […]

PMCID: 5100842
PMID: 27840574
DOI: 10.4137/EBO.S40648

[…] on eukaryote models and using default parameters. only the signal peptide predicted by two programs was considered as valid. cellular localization was predicted by ipsort, targetp, mito-prot, and eslpred2 using default parameters and non-plant or eukaryote prediction models. subcellular localization equally predicted by at least two methods was considered as valid., the predicted amino acid […]

PMCID: 5059228
PMID: 27730518
DOI: 10.1186/s12284-016-0127-0

[…] there are many reliable bioinformatics tools available to predict protein subcellular localization. here the subcellular localizations of osruss were predicted by targetp, plant-mploc, yloc, eslpred2, targetloc and multiloc2 (table ), respectively. osrus1 and osrus5 were predicted to localize to the chloroplast by all six programs used. although the subcellular localizations […]

PMCID: 4746824
PMID: 26861502
DOI: 10.1186/s12864-016-2422-y

[…] nuclear localization signal (nls). to find candidate effectors that target the plant nucleus, the r. irregularis secretome was searched for proteins containing a nls using wolf psort, nucleo and eslpred2 (fungi) software with default parameters [–]. we identified 56 predicted proteins containing at least one nls (fig. ).(ii) small and cysteine rich (scr) proteins. several known effectors […]


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ESLpred institution(s)
Department of Biotechnology, Panjab University, Chandigarh, India

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