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ESLpred specifications

Information


Unique identifier OMICS_06614
Name ESLpred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Maintainer


Publications for ESLpred

ESLpred citations

 (30)
library_books

Genome Wide Identification of the Alba Gene Family in Plants and Stress Responsive Expression of the Rice Alba Genes

2018
Genes
PMCID: 5924525
PMID: 29597290
DOI: 10.3390/genes9040183

[…] The subcellular localization was analyzed in silico using BaCelLo [], ESLPred [], YLoc [], PSORT II [], LocTree3 [], WoLF PSORT [], Plant-mPLoc [], and CELLO []. The NCBI database was used to retrieve a 1500-bp DNA sequence from the 5′-upstream region of each Alba gene, […]

library_books

Mycobacterium tuberculosis Cpn60.2 (GroEL2) blocks macrophage apoptosis via interaction with mitochondrial mortalin

2017
PMCID: 5399554
PMID: 28288970
DOI: 10.1242/bio.023119

[…] Given the massive export of Cpn60.2 beyond mycobacterial phagosome, we consulted the web servers SLPFA (http://sunflower.kuicr.kyoto-u.ac.jp/~tamura/slpfa.html) and ESLpred (http://www.imtech.res.in/raghava/eslpred/) to define its destinations. SLPFA and ESLpred are frequently consulted for automated prediction of protein subcellular localization () and both pred […]

library_books

Predicting Protein Subcellular Localization: Past, Present, and Future

2016
PMCID: 5187447
PMID: 15901249
DOI: 10.1016/S1672-0229(04)02027-3

[…] edicts 14 animal and 17 plant subcellular localizations. Extensions of the PSORT method include: PSORT II (a modified decision algorithm; ref. ) and PSORT-B (with focus on bacterial proteins; ref. ). ESLpred was developed using the Reinhardt and Hubbard data set and is an SVM-based method, which combines the dipeptide composition and PSI-BLAST scores . Drawid and Gerstein presented a method that i […]

library_books

A Comparative In Silico Study of the Antioxidant Defense Gene Repertoire of Distinct Lifestyle Trypanosomatid Species

2016
Evol Bioinform Online
PMCID: 5100842
PMID: 27840574
DOI: 10.4137/EBO.S40648

[…] sed on eukaryote models and using default parameters. Only the signal peptide predicted by two programs was considered as valid. Cellular localization was predicted by iPSORT, TargetP, Mito-Prot, and ESLPred2 using default parameters and non-plant or eukaryote prediction models. Subcellular localization equally predicted by at least two methods was considered as valid. […]

library_books

Molecular and Bioinformatic Characterization of the Rice ROOT UV B SENSITIVE Gene Family

2016
PMCID: 5059228
PMID: 27730518
DOI: 10.1186/s12284-016-0127-0

[…] unction. There are many reliable bioinformatics tools available to predict protein subcellular localization. Here the subcellular localizations of OsRUSs were predicted by TargetP, Plant-mPloc, Yloc, ESLpred2, TargetLoc and MultiLoc2 (Table ), respectively. OsRUS1 and OsRUS5 were predicted to localize to the chloroplast by all six programs used. Although the subcellular localizations of the other […]

library_books

The effector candidate repertoire of the arbuscular mycorrhizal fungus Rhizophagus clarus

2016
BMC Genomics
PMCID: 4746824
PMID: 26861502
DOI: 10.1186/s12864-016-2422-y

[…] with nuclear localization signal (NLS). To find candidate effectors that target the plant nucleus, the R. irregularis secretome was searched for proteins containing a NLS using WoLF PSORT, Nucleo and ESLPred2 (Fungi) software with default parameters [–]. We identified 56 predicted proteins containing at least one NLS (Fig. ). Small and cysteine rich (SCR) proteins. Several known effectors from fun […]


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ESLpred institution(s)
Department of Biotechnology, Panjab University, Chandigarh, India

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