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Essential gene detection software tools | Synthetic biology

Essential genes are those genes that are needed by organisms at any time and under any conditions.

Source text:
(Ning et al., 2014) Predicting bacterial essential genes using only sequence composition information. Genet Mol Res.

Pheg
Web

Pheg Predictor of human essential genes

Predicts human gene essentiality. Pheg is based on the λ-interval Z-curve. It…

Predicts human gene essentiality. Pheg is based on the λ-interval Z-curve. It can predict whether a query gene is essential using only the CDS region of a gene as input. The tool has the potential…

CEG_Match
Web

CEG_Match

A web app for cluster of essential gene (CEG) prediction. CEG_Match tool is…

A web app for cluster of essential gene (CEG) prediction. CEG_Match tool is based on the CEG database, and was developed for prediction of essential genes according to function.

Geptop
Desktop
Web
EGP
Web

EGP Essential Gene Prediction

A web app for predicting essential genes of bacteria genome using only sequence…

A web app for predicting essential genes of bacteria genome using only sequence compositional features. These features are all derived from the primary sequences, i.e., nucleotide sequences and…

ZCURVE
Web

ZCURVE

An ab initio program for gene finding in bacterial or archaeal genomes. Based…

An ab initio program for gene finding in bacterial or archaeal genomes. Based on cross validations of 422 prokaryotic genomes, ZCURVE 3.0 has slightly higher accuracy than Glimmer 3.02. As the most…

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