EST-PAC specifications

Information


Unique identifier OMICS_23493
Name EST-PAC
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages PHP
Database management system MySQL
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
BLASTALL, ESTScan2, HMMER
Maintained Yes

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Maintainers


  • person_outline Yvan Strahm <>
  • person_outline David Powell <>
  • person_outline Christophe Lefevre <>

Publication for EST-PAC

EST-PAC in publication

PMCID: 2672089
PMID: 19254371
DOI: 10.1186/1471-2164-10-95

[…] the sabia system for bacterial genomes (sabia []). other applications focus on est sequences, and although they are useful to identify and characterise genes contained in a cdna clone (autofact[], est-pac[], orest[]), they cannot easily be employed to judge the length of the insert in a cdna clone nor design new primers needed to sequence the whole insert. est express [], on the other hand, […]


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EST-PAC institution(s)
Victorian Bioinformatics Consortium, Monash University, Clayton, VIC, Australia; Department of Zoology, the University of Melbourne, Melbourne, VIC, Australia

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