ERDS-pe specifications

Unique identifier:
OMICS_22080
Software type:
Application/Script
Restrictions to use:
None
Output data:
A tab-delimited file with CNVs
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Name:
Estimation by Read Depth with Singlenucleotide variants from Pooled Exome sequencing data
Interface:
Command line interface
Input format:
BAM,BED,VCF
Operating system:
Unix/Linux
Version:
1.0
Requirements:
Numpy, PyVCF, Pysam

versioning

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ERDS-pe distribution

download

ERDS-pe support

Maintainers

  • Yadong Wang <>
  • Renjie Tan <>
  • Qinghua Jiang <>

forum

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Credits

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Publications

Institution(s)

School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China; School of Software, Harbin Institute of Technology, Harbin, China; School of Life Science and Technology, Harbin Institute of Technology, Harbin, China; Department of Mathematics Harbin Institute of Technology, Harbin, China

Funding source(s)

Supported by the National Natural Science Foundation of China (No: 61571152), the National High-tech R&D Program of China (863 Program) [Nos: 2012AA02A601, 2014AA021505, 2015AA020101, 2015AA020108], the National Science and Technology Major Project [No: 2013ZX03005012] and the Major State Research Development Program of China [No: 2016YFC1202302].

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