estMOI specifications


Unique identifier OMICS_02240
Name estMOI
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data An alignment, variant regions and an optional file of regions to exclude from analysis.
Input format BAM+VCF
Output data A file containing haplotypes and MOI estimates for all combinations of three SNPs that fulfill the distance constraints, and a file contains a summary of final MOI estimates from a genome wide computation of haplotype counts.
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Samuel Assefa <>

Publication for estMOI

estMOI institution(s)
London School of Hygiene and Tropical Medicine, London, UK; Wellcome Trust Sanger Institute, Hinxton, UK; Malawi-Liverpool-Wellcome Trust Clinical Research Programme, Blantyre, Malawia
estMOI funding source(s)
Supported by Medical Research Council UK, and Malaria Capacity Development Consortium funded by the Wellcome Trust.

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