ESTprep statistics

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ESTprep specifications

Information


Unique identifier OMICS_15133
Name ESTprep
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data An amino acid sequence.
Input format FASTA
Operating system Unix/Linux, Mac OS, Windows
Programming languages C
Computer skills Advanced
Version 3.1.4
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Todd Scheetz

Publication for ESTprep

ESTprep citation

library_books

An annotated cDNA library of juvenile Euprymna scolopes with and without colonization by the symbiont Vibrio fischeri

2006
BMC Genomics
PMCID: 1574308
PMID: 16780587
DOI: 10.1186/1471-2164-7-154

[…] evaluated for 3 features: 1) overall sequence quality (phred q-score >25); 2) percent of sequence (in nt) over q20 > 50%, and 3) the quality-trimmed est insert length of more than 100 bp [,]., estprep [] and repeatmasker (smit and green, unpublished data) programs were used to assess the presence of the following est features: vector cloning site, restriction site, polyadenylation tail […]


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ESTprep institution(s)
Center for Bioinformatics and Computational Biology, The University of Iowa, Iowa City, IA, USA; Department of Ophthalmology, The University of Iowa, Iowa City, IA, USA; Department of Electrical and Computer Engineering, The University of Iowa, Iowa City, IA, USA; Department of Pediatrics, The University of Iowa, Iowa City, IA, USA; Department of Biomedical Engineering, The University of Iowa, Iowa City, IA, USA; Department of Biochemistry, The University of Iowa, Iowa City, IA, USA; Department of Physiology, The University of Iowa, Iowa City, IA, USA; Howard Hughes Medical Institute, The University of Iowa, Iowa City, IA, USA

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