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ESTree specifications

Information


Unique identifier OMICS_15618
Name ESTree
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained No

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Publication for ESTree

ESTree citations

 (4)
call_split

Transcriptomic Profiling during the Post Harvest of Heat Treated Dixiland Prunus persica Fruits: Common and Distinct Response to Heat and Cold

2012
PLoS One
PMCID: 3516522
PMID: 23236430
DOI: 10.1371/journal.pone.0051052
call_split See protocol

[…] ndant databases at: (1) the National Center of Biotechnology Information (NCBI; http://www.ncbi.nlm.nih.gov/pubmed/); (2) the Prunus persica EST collection at ESTreeDB database (http://www.itb.cnr.it/estree) ; (3) the TIGR transcript assembly database for all public Prunus persica and plant ESTs, or PlantTA (http://plantta.tigr.org) and (4) The Arabidopsis Information Resource (http://www.arabido […]

library_books

Identification and differential expression dynamics of peach small GTPases encoding genes during fruit development and ripening

2010
J Exp Bot
PMCID: 2882273
PMID: 20501747
DOI: 10.1093/jxb/erq116

[…] ll monomeric GTPases of the RAS superfamily. All sequences encoding small GTPases from Arabidopsis () were used to carry out BLASTn and tBLASTx searches against the available databases of peach ESTs (ESTree, http://www.itb.cnr.it/estree/; NCBI, http://www.ncbi.nlm.nih.gov; http://plantta.jcvi.org/). A cut-off value of E−20 was chosen for sequence selection, and 200 peach EST cDNAs were identified […]

library_books

Comparative EST transcript profiling of peach fruits under different post harvest conditions reveals candidate genes associated with peach fruit quality

2009
BMC Genomics
PMCID: 2748099
PMID: 19744325
DOI: 10.1186/1471-2164-10-423

[…] but were publicly release to NCBI in 2006 (accession numbers: DY633390-DY654328, DW347789-DW359346). These 32,497 pre-release EST sequences also make up almost half of the sequences available in the ESTree database (75,404 ESTs) [,]. In addition to the sequences we have release previously, we are releasing an additional 9,022 EST sequences with the publication of this manuscript. This is a total […]

library_books

Version VI of the ESTree db: an improved tool for peach transcriptome analysis

2008
BMC Bioinformatics
PMCID: 2323672
PMID: 18387211
DOI: 10.1186/1471-2105-9-S2-S9

[…] The ESTree and the GDR databases represent the only existing online resources dedicated to peach EST analysis. The two databases are very similar in terms of entry number (71,540 peach sequences in the ES […]

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ESTree institution(s)
Parco Tecnologico Padano, Lodi, Italy; CISI, Segrate (MI), Italy; Istituto Tecnologie Biomediche, Segrate (MI), Italy
ESTree funding source(s)
This work was supported by Parco Tecnologico Padano, Laboratory of Interdisciplinary Technologies in Bioinformatics (LITBIO) and CISI and by the MIUR "Functional Genomics", "Bioinformatics for Genome and Proteome" projects, the EU BIOINFOGRID project, and FIRB projects.

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