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ESyPred3D specifications

Information


Unique identifier OMICS_10526
Name ESyPred3D
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/ESyPred3D

Maintainer


  • person_outline Christophe Lambert

Publication for ESyPred3D

ESyPred3D citations

 (54)
library_books

Identification of a RAC/AKT like gene in Leishmania parasites as a putative therapeutic target in leishmaniasis

2017
PMCID: 5633885
PMID: 29017516
DOI: 10.1186/s13071-017-2379-y

[…] not been resolved experimentally, we used a virtual structural model based on its homology with human akt1 protein, previously reported in the protein data bank (pdb). the model was built using the esypred3d web server 1.0 program []. the structure of the akt inhibitor x was obtained from zinc database [] in mol2 format. to improve the modeling of the putative interaction between protein […]

library_books

Exome sequencing identified a novel missense mutation c.464G>A (p.G155D) in Ca2+ binding protein 4 (CABP4) in a Chinese pedigree with autosomal dominant nocturnal frontal lobe epilepsy

2017
Oncotarget
PMCID: 5668010
PMID: 29108277
DOI: 10.18632/oncotarget.20694

[…] by the p.g155d mutation is highly conserved between primate mammal species (figure ). the three dimensional structure of the cabp4 protein with the novel missense mutation was modeled using the esypred3d web server (figure ). the c.464g>a substitution replaces a glycine residue with an aspartic acid residue, additionally containing an acidic side chain, at position 155, which is within […]

library_books

Structural and functional mapping of Rtg2p determinants involved in retrograde signaling and aging of Saccharomyces cerevisiae

2017
PLoS One
PMCID: 5417653
PMID: 28472157
DOI: 10.1371/journal.pone.0177090

[…] correlations and conservation were calculated using pfstats as described previously []., molecular modeling of rtg2p was performed in five independent servers, robetta [], swiss-model [], phyre2 [], esypred3d [] and i-tasser [] using default settings. the models obtained were validated by analysis of the ramachandran diagram () and through verify3d program () []. the best model showed 90.2% […]

library_books

Role and mechanism of action of leucine rich repeat kinase 1 in bone

2017
PMCID: 5348726
PMID: 28326224
DOI: 10.1038/boneres.2017.3

[…] mapkkk family, and play a critical role in regulating osteoclast differentiation and bone formation., we have chosen tak1 as a template to build three-dimensional structures of human lrrk1 using the esypred3d automated homology modeling program (swiss institute of bioinformatics, switzerland) because mice with disruption of tak1 also show an osteopetrosis phenotype., sequence analyses […]

library_books

Pharmacoinformatics, Adaptive Evolution, and Elucidation of Six Novel Compounds for Schizophrenia Treatment by Targeting DAOA (G72) Isoforms

2017
Biomed Res Int
PMCID: 5288522
PMID: 28197415
DOI: 10.1155/2017/5925714

[…] homology modeling was employed to predict three-dimensional (3d) structures of daoa by satisfying spatial restraints. threading approach (swiss model [], i-tasser [], mod-web [], 3d-jigsaw [], and esypred3d []) were also employed for structure prediction. the 3d structures for daoa isoforms were visualized on ucsf chimera 1.10. the predicted structures of daoa isoforms were minimized by amber […]

library_books

Localization and interactions of Plasmodium falciparum SWIB/MDM2 homologues

2016
Malar J
PMCID: 4721021
PMID: 26791088
DOI: 10.1186/s12936-015-1065-9

[…] was calculated using emboss needle []., structural modelling of the malaria proteins was conducted with the online servers of the swiss model workspace automatic modelling mode [], phyre2 [] and esypred3d web server 1.0 []. the following crystal and solution structures were used: the xenopus laevis mdm2 swib/mdm2 domain [pdb id: 1ycq chain a] [], the mus musculus swi/snf-related, […]


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ESyPred3D institution(s)
Facultés Universitaires Notre-Dame de la Paix, Unité de Recherche en Biologie Moléculaire, Namur, Belgium

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