ESyPred3D pipeline

ESyPred3D specifications

Information


Unique identifier OMICS_10526
Name ESyPred3D
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/ESyPred3D

Maintainer


  • person_outline Christophe Lambert <>

Publication for ESyPred3D

ESyPred3D citations

 (4)
2013
PMCID: 3660340

[…] of yesods [30], [31]. preliminary studies on the secondary structures were carried out using online software espript 2.2. the deduced amino acid sequences of yesods were submitted to online server esypred3d web server 1.0 [32] to obtain a pdb file. pymol software was used to view the pdb files for constructing the 3d structure., the y. enterocolitica soda, sodb and sodc sequences […]

2013
PMCID: 3664412

[…] on a 4–12% sds-page gradient gel with mops buffer., the homology model for mtre has previously been reported (janganan et al., 2011a,b). two independent homology models of mtrd were created using esypred3d (lambert et al., 2002) and utilizing the modeller (sali and blundell, 1993) homology-modelling engine based on the high-resolution experimental structures of acrb (2dhh.pdb) and mexb […]

2013
PMCID: 3792869

[…] using espript 2.2 [34]. phylogenetic analyses were carried out with mega 5.1 [35] using the neighbour-joining method [36]. the estgta2 3d structure was predicted by homology modelling using the esypred3d program [37] using b. sp h-257 mgl crystal structure (pdb no. 3rm3) as template (89% identity with estgta2). image of the resulting 3d model was generated using pymol and the quality […]

2012
PMCID: 3527289

[…] were carried out with appropriate co-transformed vectors., the mutations were mapped on the proposed rica structure using macpymol (http://www.pymol.org/). the proposed structure was obtained using esypred3d program [13] and verified for correctness using verify3d [14] server (http://nihserver.mbi.ucla.edu/verify_3d/)., purified his6-rica was obtained from e. coli bl21 (de3) over-expression […]

ESyPred3D institution(s)
Facultés Universitaires Notre-Dame de la Paix, Unité de Recherche en Biologie Moléculaire, Namur, Belgium

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