euHCVdb statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

euHCVdb specifications

Information


Unique identifier OMICS_12691
Name euHCVdb
Alternative name European Hepatitis C Virus database
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Version 122.0
Maintained Yes

Taxon


  • Viruses
    • Hepatitis C virus genotype 2
    • Hepatitis C virus genotype 3
    • Hepatitis C virus genotype 4

Maintainer


  • person_outline Christophe Combet

Publications for European Hepatitis C Virus database

euHCVdb citations

 (6)
library_books

Natural HCV variants with increased replicative fitness due to NS3 helicase mutations in the C terminal helix α18

2016
Sci Rep
PMCID: 4726148
PMID: 26787124
DOI: 10.1038/srep19526

[…] From the European HCV database (https://euhcvdb.ibcp.fr/euHCVdb/), we retrieved 218, 359, 46 and 29 worldwide NS3 sequences of strains from genotype 1a, 1b, 2 and 3 respectively. Sequences likely represent true variants present within the d […]

call_split

Aminoterminal Amphipathic α Helix AH1 of Hepatitis C Virus Nonstructural Protein 4B Possesses a Dual Role in RNA Replication and Virus Production

2014
PLoS Pathog
PMCID: 4231108
PMID: 25392992
DOI: 10.1371/journal.ppat.1004501
call_split See protocol

[…] Sequence analyses were performed using the web-based tools available at the European HCV Database (http://euhcvdb.ibcp.fr/) and the Network Protein Sequence Analysis (NPSA) website of the Institut de Biologie et Chimie des Protéines (IBCP) (http://npsa-pbil.ibcp.fr) . Multiple sequence alignment and anal […]

library_books

Expanded Classification of Hepatitis C Virus Into 7 Genotypes and 67 Subtypes: Updated Criteria and Genotype Assignment Web Resource

2013
PMCID: 4063340
PMID: 24115039
DOI: 10.1002/hep.26744

[…] Website at http://talk.ictvonline.org/links/hcv/hcv-classification.htm and will be updated regularly by the authors with information shared across existing HCV databases (http://hcv.lanl.gov/; http://euhcvdb.ibcp.fr/euHCVdb/), typing tools, and other resources (e.g., http://www.bioafrica.net/rega-genotype/html/subtypinghcv.html; http://comet.retrovirology.lu/; http://hcv.lanl.gov/content/sequence/ […]

call_split

Phylogeography, Risk Factors and Genetic History of Hepatitis C Virus in Gabon, Central Africa

2012
PLoS One
PMCID: 3411564
PMID: 22870274
DOI: 10.1371/journal.pone.0042002
call_split See protocol

[…] sis, NS5B nucleotide sequences were aligned initially by CLUSTAL_X 1.81 and subsequently adjusted by hand. The sequences were compared with reference sequences from the European HCV database (http://euhcvdb.ibcp.fr/euHCVdb/) and the Los Alamos database (http://hcv.lanl.gov/). Phylogenetic trees were estimated and assessed by the bootstrapping and neighbor-joining methods under the Kimura two-para […]

library_books

Structural and Functional Studies of Nonstructural Protein 2 of the Hepatitis C Virus Reveal Its Key Role as Organizer of Virion Assembly

2010
PLoS Pathog
PMCID: 3002993
PMID: 21187906
DOI: 10.1371/journal.ppat.1001233

[…] Sequence analyses were performed by using Network Protein Sequence Analysis (NPSA) (http://npsa-pbil.ibcp.fr ) and European HCV Database (http://euhcvdb.ibcp.fr ). Multiple-sequence alignments were performed with CLUSTAL W , by using the default options. Protein secondary structures were deduced from a large set of prediction methods available […]

call_split

A Novel Diagnostic Target in the Hepatitis C Virus Genome

2009
PLoS Med
PMCID: 2637920
PMID: 19209955
DOI: 10.1371/journal.pmed.1000031
call_split See protocol

[…] were analyzed using the Lasergene software package (DNAStar). All database work was performed online on Los Alamos National Laboratory (LANL) (http://hcv.lanl.gov/content/hcv-index) and euHCV (http://euhcvdb.ibcp.fr/euHCVdb) domains. […]

Citations

Looking to check out a full list of citations?

euHCVdb institution(s)
Institut de Biologie et Chimie des Protéines (UMR5086), CNRS, University of Lyon 1 IFR 128 BioSciences, Lyon, France; Swiss Institute of Bioinformatics, Geneva, Switzerland; Department for Molecular Virology, University of Heidelberg, Heidelberg, Germany; Institute for Immunology, University of Munich, Munich, Germany; Division of Gastroenterology and Hepatology, Centre Hospitalier Universitaire Vaudois, University of Lausanne, Lausanne, Switzerland; Department of Virology, INSERM U635, Henri Mondor Hospital, University of Paris XII, Creteil, France; Center for the Study of Hepatitis C, Laboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY, USA; INSERM U271, Lyon, France

euHCVdb reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review euHCVdb