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eulerAPE specifications

Information


Unique identifier OMICS_19518
Name eulerAPE
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Version 3.0.0
Stability Stable
Source code URL http://www.eulerdiagrams.org/eulerAPE/eulerAPE_3.0.0.jar
Maintained Yes

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  • person_outline Luana Micallef

Publication for eulerAPE

eulerAPE citations

 (49)
library_books

Pyoverdine, a siderophore from Pseudomonas aeruginosa, translocates into C. elegans, removes iron, and activates a distinct host response

2018
PMCID: 5955448
PMID: 29532717
DOI: 10.1080/21505594.2018.1449508

[…] all these microarrays were performed using gpl200 platform (affimetrix). all comparisons were performed between upregulated genes only. area-proportional venn diagrams were drawn using the eulerape (http://www.eulerdiagrams.org/eulerape/v2/)., statistical significance of overlaps between microarray conditions was determined based on hypergeometric probability., the coding sequence […]

library_books

The assassin bug Pristhesancus plagipennis produces two distinct venoms in separate gland lumens

2018
Nat Commun
PMCID: 5823883
PMID: 29472578
DOI: 10.1038/s41467-018-03091-5

[…] with the exception of venom obtained by harassment, where three insects were used due to the lower amount of venom available. the area-proportional venn diagram shown in figure 2b was produced using eulerape software []., nucleotide and protein sequences discovered in this project were submitted to genbank and assigned the accession numbers ky030911–ky031319. raw sequencing reads […]

library_books

Adeno associated Virus Genome Population Sequencing Achieves Full Vector Genome Resolution and Reveals Human Vector Chimeras

2018
PMCID: 5948225
PMID: 29766023
DOI: 10.1016/j.omtm.2018.02.002

[…] (u6 and h1 promoters, respectively), sequences mapping to these regions were removed from the analysis. circos plots were also employed to visualize aligned reads. venn diagrams were drawn using eulerape. secondary structures of selected reads were visualized by mfold. constraints to force base-pairing of itr regions were used. other parameters were set to default. aggregation plots […]

library_books

Non parent of Origin Expression of Numerous Effector Genes Indicates a Role of Gene Regulation in Host Adaption of the Hybrid Triticale Powdery Mildew Pathogen

2018
Front Plant Sci
PMCID: 5797619
PMID: 29441081
DOI: 10.3389/fpls.2018.00049

[…] in the hybrid, four pairwise comparisons were done: t3-8 vs. b.g. tritici, t3-8 vs. b.g. secalis, thun-12 vs. b.g. tritici and thun-12 vs. b.g. secalis. the venn diagramms were produced using eulerape (micallef and rodgers, )., we have also compared our mapping and read count strategy with the rna-seq analysis pipeline “salmon” (patro et al., ), using standard parameters. correlation […]

library_books

Defining tissue proteomes by systematic literature review

2018
Sci Rep
PMCID: 5765030
PMID: 29323144
DOI: 10.1038/s41598-017-18699-8

[…] and if they agree with the set inclusion criteria will be added to our access and sql databases and will be visible on our website., the venn diagrams used to analyse these data were produced using eulerape., in order to characterise the functionality of msp, bliss and paxdb we uploaded the gene list of each proteome into qiagen’s ingenuity pathway analysis (ipa, qiagen redwood city, […]

library_books

Distinct contributions of functional and deep neural network features to representational similarity of scenes in human brain and behavior

2018
eLife
PMCID: 5860866
PMID: 29513219
DOI: 10.7554/eLife.32962.016

[…] ilar results were found, however, when variance was partitioned for individual participant’s rdms and then averaged across participants. to visualize this information in an euler diagram, we used the eulerape software ()., using the same approach as in the previous section, a second set of regression analyses was performed to determine the degree of shared variance between the behavioral categoriz […]


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eulerAPE institution(s)
School of Computing, University of Kent, Canterbury, CT, USA

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