eulerAPE statistics

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Citations per year

Number of citations per year for the bioinformatics software tool eulerAPE
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Tool usage distribution map

This map represents all the scientific publications referring to eulerAPE per scientific context
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Associated diseases

This word cloud represents eulerAPE usage per disease context
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Protocols

eulerAPE specifications

Information


Unique identifier OMICS_19518
Name eulerAPE
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Version 3.0.0
Stability Stable
Source code URL http://www.eulerdiagrams.org/eulerAPE/eulerAPE_3.0.0.jar
Maintained Yes

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Maintainer


  • person_outline Luana Micallef

Publication for eulerAPE

eulerAPE citations

 (27)
library_books

The assassin bug Pristhesancus plagipennis produces two distinct venoms in separate gland lumens

2018
Nat Commun
PMCID: 5823883
PMID: 29472578
DOI: 10.1038/s41467-018-03091-5

[…] with the exception of venom obtained by harassment, where three insects were used due to the lower amount of venom available. The area-proportional Venn diagram shown in Figure 2b was produced using eulerAPE software []. […]

library_books

Adeno associated Virus Genome Population Sequencing Achieves Full Vector Genome Resolution and Reveals Human Vector Chimeras

2018
PMCID: 5948225
PMID: 29766023
DOI: 10.1016/j.omtm.2018.02.002

[…] nces (U6 and H1 promoters, respectively), sequences mapping to these regions were removed from the analysis. Circos plots were also employed to visualize aligned reads. Venn diagrams were drawn using eulerAPE. Secondary structures of selected reads were visualized by mfold. Constraints to force base-pairing of ITR regions were used. Other parameters were set to default. Aggregation plots were gene […]

library_books

Non parent of Origin Expression of Numerous Effector Genes Indicates a Role of Gene Regulation in Host Adaption of the Hybrid Triticale Powdery Mildew Pathogen

2018
Front Plant Sci
PMCID: 5797619
PMID: 29441081
DOI: 10.3389/fpls.2018.00049

[…] ression in the hybrid, four pairwise comparisons were done: T3-8 vs. B.g. tritici, T3-8 vs. B.g. secalis, THUN-12 vs. B.g. tritici and THUN-12 vs. B.g. secalis. The Venn diagramms were produced using EulerAPE (Micallef and Rodgers, ).We have also compared our mapping and read count strategy with the RNA-Seq analysis pipeline “Salmon” (Patro et al., ), using standard parameters. Correlation between […]

library_books

Defining tissue proteomes by systematic literature review

2018
Sci Rep
PMCID: 5765030
PMID: 29323144
DOI: 10.1038/s41598-017-18699-8

[…] ls) and if they agree with the set inclusion criteria will be added to our Access and SQL databases and will be visible on our website.The Venn diagrams used to analyse these data were produced using eulerAPE. […]

library_books

Ancestral perinatal obesogen exposure results in a transgenerational thrifty phenotype in mice

2017
Nat Commun
PMCID: 5722856
PMID: 29222412
DOI: 10.1038/s41467-017-01944-z

[…] nned by SICER islands or DAIs, and their significant enrichment for GO terms were inspected using MouseMine tools as previously indicated (Supplementary Data , , and ). Venn diagrams were drawn using eulerAPE v3. […]

library_books

Genome wide DNase hypersensitivity, and occupancy of RUNX2 and CTCF reveal a highly dynamic gene regulome during MC3T3 pre osteoblast differentiation

2017
PLoS One
PMCID: 5703546
PMID: 29176792
DOI: 10.1371/journal.pone.0188056

[…] e-seq bioinformatic pipelines were partially performed using tool sets available on the Galaxy web-based platform for genome data analysis [–], unless otherwise stated. Venn diagrams were drawn using eulerAPE []. Motif analysis was performed using the Hypergeometric Optimization of Motif EnRichment (HOMER) tool suite (version 4) [] for de novo discovery of overrepresented motifs within DHS sites. […]


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eulerAPE institution(s)
School of Computing, University of Kent, Canterbury, CT, USA

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