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EuMicrobedbLite

A light weight comprehensive genome resource and sequence analysis platform for oomycete organisms. EuMicrobedbLite is a successor of the VBI Microbial Database (VMD) that was built using the Genome Unified Schema (GUS). This database has 26 publicly available genomes and 10 EST datasets of oomycete organisms. The browser page has dynamic tracks presenting comparative genomics analyses, coding and non-coding data, tRNA genes, repeats and EST alignments. In addition, 44777 core conserved proteins were defined from twelve oomycete organisms that form 2974 clusters. The user interface has undergone major changes for ease of browsing. Queryable comparative genomics information, conserved orthologous genes and pathways are among the new key features updated in this database. Annotations for the organisms are updated once every six months to ensure quality.

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2 user reviews

2 user reviews

Arijit's avatar image Arijit's country flag

Arijit

hub for oomycetes genomes excellent comparative genome browser

Arup Ghosh's avatar image Arup Ghosh's country flag

Arup Ghosh

A great resource for Oomycete genomics data analysis.

EuMicrobedbLite forum

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EuMicrobedbLite classification

  • Fungi

EuMicrobedbLite specifications

Restrictions to use:
None
Data access:
File download, Browse
Version:
11.0
Community driven:
Yes
User data submission:
Allowed
Maintained:
Yes

EuMicrobedbLite support

Documentation

Maintainer

  • Sucheta Tripathy <>

Credits

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Publications

Institution(s)

Computational Genomics lab, Structural Biology and Bioinformatics Division, Council of Scientific and Industrial Research-Indian Institute of Chemical Biology, Jadavpur, Kolkata, India; Center for Genome Research and Biocomputing and Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA; Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China

Funding source(s)

This work was supported in part by grants from the USDA National Institute of Food and Agriculture, #2007- 35600-18530 and #2011-68004-30104, from the US National Science Foundation, #MCB- 0731969, and a DBT-RLS fellowship, Department of Biotechnology and CSIR-Genesis, Govt. of India.

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.