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Euplotid specifications

Information


Unique identifier OMICS_21919
Name Euplotid
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.2
Stability Stable
Maintained Yes

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Additional information


https://dborgesr.github.io/Euplotid/

Publication for Euplotid

Euplotid in publications

 (5)
PMCID: 4850378
PMID: 27126745
DOI: 10.1038/srep24874

[…] (85% ml, 1.00 bi)., within the class spirotrichea, the genus hemigastrostyla is not sister to oligotrichs in the ssu rdna tree (), whereas this is the case in the concatenated tree (), and the euplotid family uronychiidae clusters with discocephalida rather than euplotida ()., within the class oligohymenophorea, cristigera groups with other cyclidiids and thigmotrichids with moderate […]

PMCID: 4759687
PMID: 26891713
DOI: 10.1038/srep21139

[…] the slippery sequence was artificially removed. then these new fs-genes and non-prf transcripts were translated into amino acid sequences using the getorf program in the emboss package with the euplotid nuclear code, and the longest cdss were obtained by using a custom perl script. subsequently, the amino acid sequences were loaded into pfamscan to perform protein domain annotation, […]

PMCID: 4258088
PMID: 24498929
DOI: 10.1111/jeu.12104

[…] related to the psilotrichidae., how can we be sure that urospinula, hemiholosticha, and psilotrichides are confamilial with p. acuminata? first, all have a rigid cortex already described by ,) as “euplotid”. second, they all have a similar size and an undifferentiated ciliature without, e.g. distinct frontal, marginal, and buccal cirri. third, p. hawaiiensis has a great overall similarity […]

PMCID: 3413206
PMID: 22891065
DOI: 10.3389/fmicb.2012.00288

[…] )., there are obligate as well as facultative symbioses with phototrophs: platyophrya chlorelligera, for instance, contains zoochlorella cells at all life stages—even in cysts. on the other hand, euplotid ciliates seem to contain algae only in summer months (dolan, ). to the contrary, for freshwater ciliates the absence or presence of zoochlorellae can be used for species identification […]

PMCID: 3393704
PMID: 22808216
DOI: 10.1371/journal.pone.0040635

[…] the resulting data reveal that: 1) the alpha-tubulin gene is suitable phylogenetic marker for euplotids at the family level, since both nucleotide and amino acid phylogenies recover all monophyletic euplotid families as defined by both morphological criteria and ssu-rdna trees; however, alpha-tubulin gene is not a good marker for defining species, order and subclass; 2) for seven out of nine […]

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