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EUROCarbDB specifications

Information


Unique identifier OMICS_05693
Name EUROCarbDB
Restrictions to use None
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Eurocarbdb

Publication for EUROCarbDB

EUROCarbDB citations

 (7)
library_books

Bioengineering of rFVIIa Biopharmaceutical and Structure Characterization for Biosimilarity Assessment

2018
PMCID: 5874873
PMID: 29351237
DOI: 10.3390/bioengineering5010007

[…] External calibration for glycans was performed using a dextran ladder (Sigma). Data analysis was performed in FlexControl 3.4 (Bruker Daltonics) and spectra were evaluated using the GlycoPeakfinder (EuroCarbDB, European Bioinformatics Institute, Heidelberg, Germany) software. Assigned glycan structures were built with the GlycoWorkbench software (1.1 version, EuroCarbDB).Intact mass of biotherape […]

library_books

Profiling of different pancreatic cancer cells used as models for metastatic behaviour shows large variation in their N glycosylation

2017
Sci Rep
PMCID: 5709460
PMID: 29192278
DOI: 10.1038/s41598-017-16811-6

[…] able Build 76) and the open-source software mMass (http://www.mmass.org). Compositional annotations as well as MS/MS peak annotations were performed in GlycoWorkbench 2.1 stable build 146 (http://www.eurocarbdb.org/) using the Glyco-Peakfinder tool (http://www.eurocarbdb.org/ms-tools/). Calibration (see Supplemental Table ) and targeted data extraction of individual mass spectra was achieved with […]

library_books

Glycomic and glycoproteomic analysis of glycoproteins—a tutorial

2017
Anal Bioanal Chem
PMCID: 5498624
PMID: 28585084
DOI: 10.1007/s00216-017-0406-7

[…] atch them with the experimental m/z value from a database and generate report in which compositions are listed together with the m/z accuracy. The software is available publicly for download from the EUROCarbDB web site [].GRITS Toolbox [] is a modular software suite that helps in processing, annotating, and archiving of glycomics data, and thereby assists in determining structures of glycans from […]

library_books

N glycosylation Profiling of Colorectal Cancer Cell Lines Reveals Association of Fucosylation with Differentiation and Caudal Type Homebox 1 (CDX1)/Villin mRNA Expression*

2016
PMCID: 4762531
PMID: 26537799
DOI: 10.1074/mcp.M115.051235

[…] er Daltonics). Peaks of signal-to-noise > 2 were picked, manually revised, and analyzed in GlycoWorkbench 2.1 stable build 146 (http://www.eurocarbdb.org/) using the Glyco-Peakfinder tool (http://www.eurocarbdb.org/ms-tools/) for generation of a glycan compositions list. Using MassyTools version 0.1.5.1, which is a novel in-house software developed for automated data processing, the resulting glyc […]

library_books

Mass Spectrometry Based N Glycomics of Colorectal Cancer

2015
Int J Mol Sci
PMCID: 4691109
PMID: 26690136
DOI: 10.3390/ijms161226165

[…] ases into a common platform called UnicarbKB [] and UnicarbDB [], which act as centralized data repositories for glycan data and work on the interface with the already available glycomics (GlycomeDB, EUROcarbDB) and proteomics (Uniprot) databases [,]. Other glyco-related databases include Glycosciences.de, Kyoto Encyclopaedia of Gene and Genomes Glycans (KEGG Glycans), and the consortium for funct […]

library_books

N /O glycosylation analysis of human FVIIa produced in the milk of transgenic rabbits

2013
Glycobiology
PMCID: 3816631
PMID: 24092837
DOI: 10.1093/glycob/cwt085

[…] ems were driven by the Thermofisher Scientific Xcalibur™ software. Interpretations of MS/MS spectra as well as the calculation of the theoretical masses were assisted by the Glycoworkbench™ software (EUROCarbDB, www.eurocarbdb.org). […]


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EUROCarbDB institution(s)
Core Facility, Molecular Structure Analysis, German Cancer Research Center, Heidelberg, Germany

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