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EuroPhenome specifications


Unique identifier OMICS_20767
Name EuroPhenome
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Not allowed
Maintained No


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Publications for EuroPhenome

EuroPhenome citations


Semantically enabling a genome wide association study database

J Biomed Semantics
PMCID: 3579732
PMID: 23244533
DOI: 10.1186/2041-1480-3-9

[…] (E-Utilities) ESearch service [] is used to validate the given list and retrieve Entrez IDs for the genes. The gene symbols for the mouse orthologs are retrieved from the MGI BioMart []. The MGI and EuroPhenome BioMarts are accessed to retrieve the MPO terms annotated to the mouse ortholog gene list. The GWAS Central REST web service is accessed to retrieve the phenotype annotations for the human […]


Anatomy ontologies and potential users: bridging the gap

J Biomed Semantics
PMCID: 3194170
PMID: 21995944
DOI: 10.1186/2041-1480-2-S4-S3

[…] lar Biology Laboratory, Biotechnology and Biological Sciences Research Council (grant #BB/G022755/1), Medical Research Council, European Commission’s FP6 Programme (contract #LSHG-CT-2006-037188) for EuroPhenome as part of the EUMODIC project.This article has been published as part of Journal of Biomedical Semantics Volume 2 Supplement 4, 2011: Proceedings of Ontologies in Biomedicine and Life Sci […]


Towards the integration of mouse databases definition and implementation of solutions to two use cases in mouse functional genomics

BMC Res Notes
PMCID: 2826352
PMID: 20205870
DOI: 10.1186/1756-0500-3-16

[…] databases represent single project outputs and are maintained at different sites. Exceptions are, for example, the mouse genome database (MGD) database of MGI [], the mouse phenome database (MPD) [], Europhenome [] and the GeneNetwork database [], which have collected information from many different sources. MGD is a database which has been optimized for researchers in the field of mouse functiona […]


Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease

Mamm Genome
PMCID: 2759022
PMID: 19649761
DOI: 10.1007/s00335-009-9208-3

[…] EMPReSS database (Green et al. ) (, which contains all the EUMORPHIA SOPs in a structured form. Data from EUMORPHIA, and subsequently EUMODIC, have been collected in the EuroPhenome database (Mallon et al. ) ( course, these high-throughput approaches are of value only if complemented by the gathering of more detailed information on lines […]


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EuroPhenome institution(s)
MRC Harwell, Mammalian Genetics Unit, Mary Lyon Centre, Harwell Science and InnovationCampus, Oxfordshire, UK; MRC Harwell, Mary Lyon Centre, Harwell Science and Innovation Campus, Oxfordshire, UK; Institut Clinique de la Souris (ICS), Illkirch, France; Helmholtz Zentrum Munich German Research Center for Environmental Health, Institute of Experimental Genetics and German Mouse Clinic, Neuherberg, Germany; The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK; Technische Universitat Munchen, Center of Life and Food Sciences Weihenstephan, Freising, Germany
EuroPhenome funding source(s)
Supported by European Commission within its FP6 Programme (contract number LSHG-CT-2006-037188 to EUMODIC, UK Medical Research Council and the NGFN (National Genome Research Network) (grant number 01GS0850).

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