EVEREST specifications

Information


Unique identifier OMICS_07082
Name EVEREST
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline EVEREST Team <>

Publication for EVEREST

EVEREST in publications

 (3)
PMCID: 5838936
PMID: 29506470
DOI: 10.1186/s12859-018-2080-y

[…] generate conserved regions or an estimate of these regions and perform the clustering based on them. these methods are more similar to our proposed approach. examples of these methods are everest [], adda [], domo [], and pclust [] and its derivatives. however all of these methods depend on pairwise sequence alignment, either on the entire set of input sequences or on some subsets […]

PMCID: 4995020
PMID: 27552220
DOI: 10.1371/journal.pone.0161338

[…] of construction of adda putative domain trees of protein sequences from their all vs. all blast results has also been presented with support for parallel/multi-threaded executions., in everest [] an all vs. all blast on the data set is followed by runs of the smith-waterman algorithm [] on the selected sequences to generate a set of putative domain regions. after applying a series […]

PMCID: 4621036
PMID: 26502173
DOI: 10.1371/journal.pone.0141541

[…] infers domain boundaries by predicting the size and the segment number of domains. domcut[] predicts inter-domain linker regions based solely on amino acid sequence composition information. pfam[–], everest[,] adda[], and fiefdom[] focus on domain boundaries prediction based on homologous alignments. chopnet[],dompro[], domnet[], pprodo[], drop[] and dobo[] use different machine learning methods […]


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EVEREST institution(s)
School of Computer Science & Engineering, The Hebrew University of Jerusalem, Jerusalem, Israel

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