ERD specifications

Unique identifier:
OMICS_04760
Interface:
Web user interface
Input data:
The folding method, the target structure, the constrain sequence, the maximum and minimum energy, the main-loop size, the rundom seed, the number of execution, the temperature, user’s e-mail address.
Output data:
The sequence found by RNA designer, the corresponding minimal free energy structure, the distance to desired structure, the minimum free energy of the predicted structure in kcal/mol.
Programming languages:
C
Stability:
Stable
Maintained:
Yes
Name:
Evolutionary RNA Designer
Restrictions to use:
None
Input format:
TXT
Biological technology:
Fluidigm Corporation
Computer skills:
Basic
Source code URL:
http://mostafa.ut.ac.ir/corna/erd-cons/erd-source.tar.gz

ERD specifications

Unique identifier:
OMICS_04760
Software type:
Package/Module
Restrictions to use:
None
Input format:
TXT
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Name:
Evolutionary RNA Designer
Interface:
Command line interface
Input data:
The folding method, the target structure, the constrain sequence, the maximum and minimum energy, the main-loop size, the rundom seed, the number of execution, the temperature.
Output data:
The sequence found by RNA designer, the corresponding minimal free energy structure, the distance to desired structure, the minimum free energy of the predicted structure in kcal/mol.
Programming languages:
C
Version:
2.0
Source code URL:
http://mostafa.ut.ac.ir/corna/erd-cons/erd-source.tar.gz

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ERD distribution

download

ERD support

Documentation

Maintainer

  • Mohammad Ganjtabesh <>
  • Mohammad Ganjtabesh <>

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Publications

Institution(s)

Department of Computer Science, School of Mathematics, Statistics, and Computer Science, College of Science, University of Tehran, Tehran, Iran; Laboratoire d’Informatique (LIX), Ecole Polytechnique, Palaiseau, France

Funding source(s)

This work was supported by NSF DMS-1016618.

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