EvolView pipeline

EvolView specifications

Information


Unique identifier OMICS_04252
Name EvolView
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.0
Stability Stable
Registration required Yes
Maintained Yes

Documentation


Maintainer


  • person_outline Songnian Hu <>

Additional information


https://github.com/evolgeniusteam/EvolviewDocumentation

Publications for EvolView

EvolView IN pipelines

 (6)
2018
PMCID: 5932348
PMID: 29755425
DOI: 10.3389/fmicb.2018.00764

[…] multiple sequence alignments were performed using clustalw. phylogentic trees were generated using the maximum-likelihood method in phyml version 3.1. phylogenetic trees were annotated using evolview (http://www.evolgenius.info/evolview/#login) (he et al., 2016)., leptospira interrogans strain lai 56601 was obtained from the national institute for the control of pharmaceutical […]

2018
PMCID: 5932348
PMID: 29755425
DOI: 10.3389/fmicb.2018.00764

[…] were performed using clustalw. phylogentic trees were generated using the maximum-likelihood method in phyml version 3.1. phylogenetic trees were annotated using evolview (http://www.evolgenius.info/evolview/#login) (he et al., 2016)., leptospira interrogans strain lai 56601 was obtained from the national institute for the control of pharmaceutical and biological products, beijing, china, […]

2017
PMCID: 5340872
PMID: 28270583
DOI: 10.1128/mBio.02014-16

[…] invariable sites and estimated gamma shape parameter (gtr + i + g). maximum likelihood phylogenetic trees were generated using raxml (56) using 100 bootstrap replicates. trees were visualized using evolview (57)., virus particles were captured using mouse anti-denv mabs 4g2 and 2h2 in carbonate buffer. mabs (see table s1 in the supplemental material) were diluted to a concentration of 20 ng/µl […]

2017
PMCID: 5510586
PMID: 28717593
DOI: 10.7717/peerj.3529

[…] et al., 2015) with automated model selection and 1,000 ultrafast bootstraps (minh, nguyen & von haeseler, 2013) to assess node support. the resulting tree was visualized using the online tool evolview (he et al., 2016). furthermore, as an approximate measure for the number of lactobacillus otus recovered with our approach, we used the average neighbor clustering algorithm as implemented […]

2017
PMCID: 5594548
PMID: 28893179
DOI: 10.1186/s12862-017-1061-5

[…] (ml) phylogenetic trees with phyml [106], with statistical branch support (sh-like). the model used to build the trees was inferred with modelgenerator [107]. the trees were visualized with evolview [108]., additional file 1: table s1. additional file 2: figure s1. additional file 3: figure s2. additional file 4: figure s3. additional file 5: figure s4. , electronic supplementary […]

EvolView institution(s)
CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics (BIG), Chinese Academy of Sciences (CAS), Beijing, China; University of Chinese Academy of Sciences, Beijing, China; Institute for Computer Science and Cluster of Excellence on Plant Sciences CEPLAS, Heinrich Heine University, Düsseldorf, Germany; BIG Data Center, Beijing Institute of Genomics (BIG), Chinese Academy of Sciences (CAS), Beijing, China

EvolView review

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Johanna Nelkner

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Web
What an awesome tool!!! I fell in love with it. I could simply upload my newick file and then make the tree look as nice as possible by increasing or decreasing horizotntal or vertical scale, show or hide branch length values, and most important of all: YOU CAN REROOT THE TREE AS YOU LIKE