EVOPRINTER statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Phylogenetic footprinting chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

EVOPRINTER specifications

Information


Unique identifier OMICS_24207
Name EVOPRINTER
Interface Web user interface
Restrictions to use None
Input format eBLAT
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Thomas B. Brody <>

Additional information


https://evoprinter.ninds.nih.gov/highschool/tutorial/index.html

Publication for EVOPRINTER

EVOPRINTER in publications

 (12)
PMCID: 4807829
PMID: 27015425
DOI: 10.1371/journal.pgen.1005961

[…] [], wgcx4 (gift from j. ng) [], uas-dfd, uas-scr, uas-antp, uas-lab (gifts from a. percival-smith) [, –]., to identify conserved hox binding sites in the ama locus we used the evoprinterhd (http://evoprinter.ninds.nih.gov/) and compared drosophila melanogaster to drosophila pseudoobscura and drosophila simulans. entry sequence was the d. melanogaster ama gene locus plus 3kb of upstream […]

PMCID: 4574355
PMID: 26377945
DOI: 10.1186/s12864-015-1897-2

[…] within the pdm locus (http://genome.ucsc.edu/). the pdm locus is approximately 125 kb (chr2l:12,565,558-12,690,307). the phylogenetic comparative analysis of these sequences was performed using the evoprinter programs (http://evoprinter.ninds.nih.gov/) and included the 12 available drosophilids. cscs identified from overlapping evoprints were annotated to include gene name hyphenated […]

PMCID: 3720722
PMID: 23935853
DOI: 10.1371/journal.pone.0068078

[…] was performed by aligning the sequences with blast-bl2seq (http://blast.ncbi.nlm.nih.gov/blast.cgi), using a word letter size 16. to refine the blast results a further analysis was carried out with evoprinter (http://evoprinter.ninds.nih.gov/) . finally, conserved domains were analyzed with jaspar (http://jaspar.cgb.ki.se/), using the ma0083.1 srf binding matrix with a threshold score of 0.8., […]

PMCID: 3409191
PMID: 22859937
DOI: 10.1371/journal.pone.0039026

[…] using with a zeiss axiocam hrc camera. laser confocal microscopic images were obtained using a zeiss lsm 501 meta laser scanning microscope., as an initial step, we performed an evoprint (http://evoprinter.ninds.nih.gov/evoprintprogramhd/evphd.html) of an arbitrarily selected 10 kilobase (kb) segment of human dna encompassing the zic2 gene as described by zic2 (nm_007129.2) reference […]

PMCID: 3256997
PMID: 22267917
DOI: 10.4137/GRSB.S8044

[…] intron 2 region for the existence of an inr-downstream core promoter element and the 3′ end was searched for the prediction of polyadenylation sequence motifs. the phylogenetic footprinting tools, evoprinter and cis-decoder, were used to detect e-boxes, bhlh binding sites, and multiple conserved sequence blocks in the dmyc region common to most drosophila species. the neural network genetic […]


To access a full list of publications, you will need to upgrade to our premium service.

EVOPRINTER institution(s)
Neural Cell-Fate Determinants Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD, USA; Office of the Scientific Director, Intramural Research Program, National Institute of Mental Health, National Institutes of Health, Bethesda, MD, USA
EVOPRINTER funding source(s)
Supported by the National Institutes of Health National Institute of Neurological Disorders and Stroke and National Institute of Medical Health Intramural Research Program.

EVOPRINTER reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review EVOPRINTER