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EVpedia specifications

Information


Unique identifier OMICS_06562
Name EVpedia
Restrictions to use None
Database management system MySQL
Maintained Yes

Publication for EVpedia

EVpedia citations

 (5)
library_books

The decade of exosomal long RNA species: an emerging cancer antagonist

2018
Mol Cancer
PMCID: 5861621
PMID: 29558960
DOI: 10.1186/s12943-018-0823-z

[…] d studies [, ]. Researchers are able to browse and retrieve information based on organism, vesicle type, content type, and sample material to search for related datasets, genes, or published studies. EVpedia is another comprehensive database that integrates high-throughput datasets of vesicular components (proteins, mRNAs, miRNAs, and lipids) from both prokaryotic and eukaryotic extracellular vesi […]

library_books

Circulating microRNAs and Bioinformatics Tools to Discover Novel Diagnostic Biomarkers of Pediatric Diseases

2017
Genes
PMCID: 5615367
PMID: 28925938
DOI: 10.3390/genes8090234

[…] networks. An integrated and comprehensive proteome, transcriptome, and lipidome database of EVs (extracellular vesicles) derived from archaea, bacteria, and eukarya, including humans is collected in EVpedia (Ver. 6 February 2015) that provides a search and browse tool for vesicular proteins, comparison of vesicular datasets by orthologue identification, gene ontology enrichment analyses and netwo […]

library_books

Kalirin and CHD7: novel endothelial dysfunction indicators in circulating extracellular vesicles from hypertensive patients with albuminuria

2017
Oncotarget
PMCID: 5362505
PMID: 28152519
DOI: 10.18632/oncotarget.14948

[…] on intensities and statistical analysis were performed using QuiXoT software. All the significant proteins found in the differential analysis were searched against two EVs databases: Vesiclepedia and EVpedia in order to find previous evidence of their expression in EVs, both MVs and exosomes, at the protein or mRNA level. […]

library_books

Genomic studies of nitrogen fixing rhizobial strains from Phaseolus vulgaris seeds and nodules

2016
BMC Genomics
PMCID: 5011921
PMID: 27601031
DOI: 10.1186/s12864-016-3053-z

[…] n level was revised manually. A global proteome correlation between strains was calculated and expressed as percentage of similar proteins. Enrichment of gene ontology (GO) terms was done through the EVPedia server (http://student4.postech.ac.kr/evpedia2_xe/xe/) using the TopGO program v2.14.0 [], with default parameters. Only the first five or 6 classes with the most significant P values, and exc […]

library_books

Identification of a novel mechanism of blood–brain communication during peripheral inflammation via choroid plexus‐derived extracellular vesicles

2016
PMCID: 5048366
PMID: 27596437
DOI: 10.15252/emmm.201606271

[…] proteome contained 14 out of the top 25 exosome markers published on the ExoCarta website (http://www.exocarta.org/) (Kalra et al, ). Figure B shows the overlap between the exosomal proteins from the EVpedia database (Kim et al, ) (http://evpedia.info; Mus musculus in vitro/in vivo), and the proteins present in both EV samples derived from control and LPS‐injected mice; the overlap is ~30%. It is […]

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EVpedia institution(s)
Department of Life Sciences, Pohang University of Science and Technology, Pohang, Korea; Division of Integrative Biosciences and Biotechnology, Pohang University of Science and Technology, Pohang, Korea; Cardiovascular Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA; Department of Clinical Immunology, Polish-American Institute of Paediatrics, Jagiellonian University Medical College, Cracow, Poland; Department of Nephrology and Hypertension, University Medical Center Utrecht, Utrecht, Netherlands; Section of Oncology, Department of Clinical Sciences, Lund University, Lund, Sweden, The Feinstein Institute for Medical Research, Manhasset, NY, USA; Department of Microbiology, Biochemistry, and Immunology, Morehouse School of Medicine, Atlanta, GA, USA; Institute of Biomedicine and Molecular Immunology (IBIM), National Research Council (CNR), Palermo, Italy; Innovation in Vesicles and Cells for Application in Therapy, Germans Trias i Pujol Research Institute, Germans Trias i Pujol University Hospital, Badalona, Spain; INSERM, UMR837 JEAN-PIERRE Aubert Research Centre, Lille, France; Department of Genetics, Cell- and Immunobiology, Semmelweis University, Budapest, Hungary; Department of Biochemistry and Molecular Biology, BIO21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, Australia; Institute of Cancer and Genetics, School of Medicine, Velindre Cancer Centre, Cardiff University, Cardiff, UK; Program in Cellular and Molecular Medicine at Boston Children's Hospital and Department of Cell Biology, Harvard Medical School, Boston, MA, USA; Section of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, Yale University School of Medicine, New Haven, CT, USA; Department of Neurology, College of Medicine, University of Tennessee Health Science Center, Memphis, TN, USA

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