Facilitates the searching of DNA motifs in either custom sequences or the proximal promoters or 3′ UTR of 50 genome-sequenced plant species using suffix-tree algorithm. ExactSearch is a user-friendly web-based server that caters to a different need of finding the already known degenerate motif sequences in a large number of plant proximal gene sequences in a very efficiently manner. To operate this method, the users only need a web browser and have access to an electronic mail account.
School of Forest Resources and Environmental Science, Michigan Technological University, Houghton, MI, USA; Department of Computer Science, Michigan Technological University, Houghton, MI, USA; State Key Laboratory of Forest Genetics and Tree Breeding, Northeast Forestry University, Harbin, Heilongjiang, China; Life Science and Technology Institute, Michigan Technological University Houghton, Michigan, MI, USA
ExactSearch funding source(s)
This work was supported by grant from National Science Foundation Advances in Biological Informatics [DBI-1458130].