Exalign specifications

Information


Unique identifier OMICS_07046
Name Exalign
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Information


Unique identifier OMICS_07046
Name Exalign
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Exalign

Exalign citations

 (2)
library_books

Assessment of orthologous splicing isoforms in human and mouse orthologous genes

2010
BMC Genomics
PMCID: 3091683
PMID: 20920313
DOI: 10.1186/1471-2164-11-534

[…] rieved from version 2 (December 2009) []. Orthologous gene pairs were determined according to the annotations available in [].Alignments between intron/exon structures have been carried out using the Exalign algorithm []. The algorithm was run in global alignment mode, and allowing intron gain/loss detection so to exclude a wrong type assignation due to intron gain/loss events between the ortholog […]

library_books

Orthology confers intron position conservation

2010
BMC Genomics
PMCID: 2996940
PMID: 20598118
DOI: 10.1186/1471-2164-11-412

[…] s from other homologs. Indeed, this been done successfully in specific case studies of gene families, i.e. chemoreceptors [,], heat shock proteins [], and homeobox genes []. Also, an algorithm called Exalign has been published where exon-intron gene structures are used to resolve phylogenetic relationships []. This method relies solely on exon lengths and phase, when available, to infer gene struc […]

Exalign institution(s)
Dipartimento di Scienze Biomolecolari e Biotecnologie, University of Milan, Milan, Italy

Exalign reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Exalign