A software package for the detection of copy number variants (CNVs) from whole-exome sequencing data. Official website Specifications Publications Classification
Specifications Desktop app Software type: Package Interface: Command line interface Restrictions to use: None Operating system: Unix/Linux Programming languages: Perl Computer skills: Advanced Stability: Stable Write a review View all reviews 0 user review Write a review about this tool Sign up for free to join and share with our community.Already have an account? Sign in to review this tool. Cancel No review has been posted. Open an issue View all issues 0 issue Open an issue about this tool Sign up for free to join and share with our community.Already have an account? Sign in to open an issue. Cancel No open issue. Publications (Magi et al., 2013) EXCAVATOR: detecting copy number variants from whole-exome sequencing data. Genome biology. PMID: 24172663 Classification High-throughput sequencing Whole-exome sequencing CNV detection Literature (Samarakoon et al., 2014) Identification of copy number variants from exome sequence data. BMC genomics. PMID: 25102989 (Kadalayil et al., 2014) Exome sequence read depth methods for identifying copy number changes. Briefings in bioinformatics. PMID: 25169955 (Tan et al., 2014) An evaluation of copy number variation detection tools from whole-exome sequencing data. Human mutation. PMID: 24599517 23 related tools AS-GENSENG OMIC_08044 CANOES OMIC_03957 Canvas OMIC_10999 cnvCapSeq OMIC_05722 cnvOffSeq OMIC_07894 Comparativ… OMIC_00329 CONDEX OMIC_05442 CONTRA OMIC_00331 COpy numbe… OMIC_07305 Copy numbe… OMIC_09995 Copy Numbe… OMIC_00330 Detection … OMIC_08687 ExoCNVTest OMIC_05445 eXome-Hidd… OMIC_03956 ExomeCNV OMIC_00333 exomeCopy OMIC_02062 ExomeDepth OMIC_05443 ExonDel OMIC_06150 FishingCNV OMIC_00334 optimalCap… OMIC_05444 PatternCNV OMIC_04189 SPLITREAD OMIC_00323 VEGAWES OMIC_10127 Show more related tools (19)