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Protocols

exceRpt specifications

Information


Unique identifier OMICS_20334
Name exceRpt
Software type Pipeline/Workflow
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 4
Stability Stable
Registration required Yes
Maintained No

Documentation


Maintainers


This tool is not available anymore.

Additional information


exceRpt tool is available on the Genboree Workbench.

Information


Unique identifier OMICS_20334
Name exceRpt
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java, R
License GNU General Public License version 3.0
Computer skills Advanced
Version 4.3.2
Stability Stable
Requirements
fastx, STAR, bowtie2, samtools, fastQC
Maintained No

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Documentation


Maintainers


This tool is not available anymore.

Additional information


exceRpt tool is available on the Genboree Workbench.

Publication for exceRpt

exceRpt citation

call_split

Experiences and practices of evolution instructors at Christian universities that can inform culturally competent evolution education

2017
PMCID: 5765522
PMID: 29398727
DOI: 10.1002/sce.21317
call_split See protocol

[…] readings. Once initial categories are created based on the first readings of the transcripts, researchers compare the cases and excerpts that have been categorized together to confirm that each case/excerpt represents the description of the category assigned by the researcher and that the cases/excerpts are not different enough from one another to warrant the creation of a new category.In this st […]


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exceRpt institution(s)
Center for Oral/Head & Neck Oncology Research, School of Dentistry, University of California at Los Angeles, Los Angeles, CA, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA; Program in Computational Biology and Bioinformatics, Yale University, , New Haven, CT, USA; Department of Integrative Biology and Physiology, University of California at Los Angeles, Los Angeles, CA, USA; Department of Oral Medicine, School of Dentistry, Pusan National University, Gyeongsangnam-do, Korea; Department of Biostatistics, University of California at Los Angeles, Los Angeles, CA, USA; Department of Pathology & Translational Genomics, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea, Seoul, Korea; Department of Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea, Seoul, Korea; Department of Pathology & Laboratory Medicine, University of California at Los Angeles, Los Angeles, Los Angeles, CA, USA
exceRpt funding source(s)
Supported by the Public Health Service (PHS) grants from the National Institute of Health/National Institute of Dental and Craniofacial Research (NIH/NIDCR) in United States: UH3 TR000923 and R90 DE022734.

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