ExiMiR specifications

Information


Unique identifier OMICS_00783
Name ExiMiR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.22.0
Stability Stable
Requirements
limma, R(>=2.10), Biobase(>=2.5.5), affyio(>=1.13.3), affy(>=1.26.1), preprocessCore(>=1.10.0), mirna10cdf
Maintained Yes

Versioning


No version available

Documentation


ExiMiR citations

 (2)
library_books

MicroRNA 100 5p indirectly modulates the expression of Il6, Ptgs1/2 and Tlr4 mRNA in the mouse follicular dendritic cell like cell line, FL Y

2014
Immunology
PMCID: 4264908
PMID: 24944008
DOI: 10.1111/imm.12342

[…] ed using a GeneChip Scanner 3000 7G and CEL files were generated using GeneChip Command Console software (AGCC). Data were background corrected and normalized by robust multi-array analysis using the ExiMiR package in R/Bioconductor.For Exiqon, 5 μg of each RNA sample was sent to Exiqon (Denmark) for quality analysis and subsequent microRNA microarray analysis. The quality of the total RNA was ver […]

library_books

Studying the System Level Involvement of MicroRNAs in Parkinson's Disease

2014
PLoS One
PMCID: 3972105
PMID: 24690883
DOI: 10.1371/journal.pone.0093751

[…] istics of the patients were given in the supplementary file (). Samples were labeled with Hy3 and Hy5 dyes. Hy3 was used for individual sample labeling and Hy5 was used for Common Reference Pool. The ExiMiR package was used for normalization of miR expression data . Logarithmic conversion [log2 (Hy3/Hy5)] was performed in order to obtain the unified expression profile of the whole dataset which wa […]

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