ExInAtor specifications

Unique identifier:
OMICS_15528
Interface:
Command line interface
Input data:
ExInAtor requires eight mandatory inputs: (1) a gene annotation in GTF format containing information on genes and exons to analyse (transcript information is ignored), (2) a catalogue of mutations in BED format, (3) the number of individual genomes or samples represented by the BED file, (4) the output folder destination, (5) a file with two columns showing the name of each chromosome and its nucleotide length, (6) a gene annotation in GTF format containing information on genes and exons of the whole genome (transcript information is ignored), (7) FASTA file of the whole genome and (8) a file containing all the possible trinucleotides.
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Requirements:
Bedtools, Awk
Software type:
Package/Module
Restrictions to use:
None
Input format:
GTF, BED, FASTA
Programming languages:
Python, R
Stability:
Stable
Maintained:
Yes

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

ExInAtor distribution

download

ExInAtor support

Documentation

Maintainer

  • Rory Johnson <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Funding source(s)

This work was supported by the Spanish Ministry of Economy and Competitiveness, ‘Centro de Excelencia Severo Ochoa 2013–2017′, SEV-2012-0208, Ramón y Cajal RYC-2011-08851, Plan Nacional BIO2011-27220, a pre-doctoral fellowship FPU14/03371 and the NCCR RNA & Disease funded by the Swiss National Science Foundation.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

Related Tools