ExomeCNV protocols

ExomeCNV specifications

Information


Unique identifier OMICS_00333
Name ExomeCNV
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 1.4
Stability Stable
Maintained Yes

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Publication for ExomeCNV

ExomeCNV IN pipeline

2016
PMCID: 4762880
PMID: 26891683
DOI: 10.1038/ncomms10690

[…] bwa aln. somatic single-nucleotide variants (compared with pc9-1) were called using mutect40 with default parameters. somatic copy number variations (cnvs; compared with pc9-1) were called using exomecnv41 with default parameters to provide a specificity and sensitivity of 99.99%. cnvs with read ratios in the range 0.6<ratio<1.4 were filtered out., variants called reflect a difference […]

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