Exonerate pipeline

Exonerate specifications

Information


Unique identifier OMICS_11232
Name Exonerate
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.2
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Guy St C Slater <>

Publication for Exonerate

Exonerate IN pipeline

2017
PMCID: 5225507
PMID: 28073340
DOI: 10.1186/s12864-016-3457-9

[…] the c. sublineolum assembly, (additional file 5: table s4), nucleotide sequences from broad gene annotations of m1.001 published previously [69] were aligned against the c. sublineolum genome using exonerate version 2.2.0 (model est2genome) [133] (additional file 5: table s4). a gene sequence was considered non-unique if there was an alignment with at least 40% of the possible score […]

Exonerate institution(s)
The Ensembl Group, EMBL – European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

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