EXPANDER pipeline

EXPANDER specifications

Information


Unique identifier OMICS_13365
Name EXPANDER
Alternative name EXpression Analyzer and DisplayER
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Input data Some gene expression data, similarity data (a pre-calculated similarity matrix), gene group data, gene ranking analysis (GSEA) or ChIP-Seq data.
Input format tab-separated TXT
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 7.2
Stability Stable
Registration required Yes
Maintained Yes

Taxon


  • Animals
    • Caenorhabditis elegans
    • Danio rerio
    • Drosophila melanogaster
    • Gallus gallus
    • Homo sapiens
    • Mus musculus
    • Rattus norvegicus
  • Eubacteria
    • Escherichia coli
  • Fungi
    • Aspergillus fumigatus
    • Saccharomyces cerevisiae
    • Schizosaccharomyces pombe
  • Plants
    • Arabidopsis thaliana
    • Oryza sativa

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Documentation


Maintainers


  • person_outline Roded Sharan <>
  • person_outline EXPANDER Team <>

Publications for EXpression Analyzer and DisplayER

EXPANDER citations

 (2)
2016
PMCID: 5027104

[…] & 2 from gene expression wash buffer kit (agilent technologies, catnb 5188–5327) and scanned twice at 5 μm resolution on a laser scanner (agilent technologies g2505 b), using the “dynamic range expander” option in the scanner software. the resulting images were processed using agilent feature extraction software v9.5., the microarray data were preprocessed using the limma package (version […]

2013
PMCID: 3597499

[…] expression profile in the pax6-null embryonic lens reported here further revealed over-representation of neurogenic genes using several tools for seeking gene-ontology enrichment david, (nih, [54]), expander (tel-aviv university, [55]), gather (duke university, [56]) and ontologizer2.0 (computational biology group, [57]). among these, four sox members—sox2, sox6, sox9 and sox11—were up-regulated […]

EXPANDER institution(s)
Blavatnik School of Computer Science, Tel Aviv University, Tel Aviv, Israel; Department of Human Molecular Genetics and Biochemistry, Tel Aviv University, Tel Aviv, Israel; Division of Gene Regulation, Netherlands Cancer Institute, Amsterdam, Netherlands; Faculty of Mathematics and Computer Science, Weizmann Institute of Science, Rehovot, Israel; Whitehead Institute for Biomedical Research, Cambridge, MA, USA
EXPANDER funding source(s)
Supported in part by the Israel Science Foundation (Grant No. 802/08) and by the European Community’s Seventh Framework Programme (Grants HEALTH-F4-2007-200767 for the APO-SYS project and HEALTH-F4-2009-223575 for the TRIREME project).

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