EXPANDER statistics

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Citations per year

Number of citations per year for the bioinformatics software tool EXPANDER
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Tool usage distribution map

This map represents all the scientific publications referring to EXPANDER per scientific context
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Associated diseases

This word cloud represents EXPANDER usage per disease context
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Popular tool citations

chevron_left Gene expression clustering Differential expression detection Bioinformatics workflows Normalization Time course Probe filtering chevron_right
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Protocols

EXPANDER specifications

Information


Unique identifier OMICS_13365
Name EXPANDER
Alternative name EXpression Analyzer and DisplayER
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Input data Some gene expression data, similarity data (a pre-calculated similarity matrix), gene group data, gene ranking analysis (GSEA) or ChIP-Seq data.
Input format tab-separated TXT
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 7.2
Stability Stable
Registration required Yes
Maintained Yes

Taxon


  • Bacteria
    • Escherichia coli
  • Invertebrates
    • Caenorhabditis elegans
    • Drosophila melanogaster
  • Plants and Fungi
    • Arabidopsis thaliana
    • Aspergillus fumigatus
    • Oryza sativa
    • Saccharomyces cerevisiae
    • Schizosaccharomyces pombe
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus
  • Vertebrates
    • Danio rerio
    • Gallus gallus

Download


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Versioning


No version available

Documentation


Maintainers


  • person_outline Roded Sharan
  • person_outline EXPANDER Team

Publications for EXpression Analyzer and DisplayER

EXPANDER citations

 (59)
library_books

Sialome diversity of ticks revealed by RNAseq of single tick salivary glands

2018
PLoS Negl Trop Dis
PMCID: 5919021
PMID: 29652888
DOI: 10.1371/journal.pntd.0006410

[…] temporal expression, Z scores of the RPKM values were used. Heatmaps were produced with the programs gplots and heatmap.2 using R []. Differential gene expression clustering was done with the program Expander version 7.1 [], using as input, RPKM data and the click algorithm. More details of the input are available in the results section, which also contains hyperlinks to several databases, as expl […]

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Salivary Glycopatterns as Potential Biomarkers for Screening of Early Stage Breast Cancer

2018
PMCID: 5898026
PMID: 29402727
DOI: 10.1016/j.ebiom.2018.01.026
call_split See protocol

[…] airs indicated up-regulation or down-regulation, respectively. Differences between multiple data sets were tested using one-way ANOVA in SPSS version 19. The original data were further analyzed using Expander 6.0 (http://acgt.cs.tau.ac.il/expander/) to perform a hierarchical clustering analysis (HCA).Statistical differences between groups were first assessed using a Kruskal-Wallis test, followed b […]

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Single Stage Breast Reconstruction Using an All In One Adjustable Expander/Implant

2018
PMCID: 5811285
PMID: 29464155
DOI: 10.1097/GOX.0000000000001609
call_split See protocol

[…] review of all patients who underwent alloplastic breast reconstruction with a senior breast surgeon at our institution (senior author). A total of 120 patients underwent reconstruction with Spectrum expander/implants between January 2002 and January 2014. Data were collected from both electronic and paper medical records by 2 independent reviewers. Patients with congenital breast deformities were […]

library_books

Comparative Analysis for Glycopatterns and Complex Type N Glycans of Glycoprotein in Sera from Chronic Hepatitis B and C Infected Patients

2017
Front Physiol
PMCID: 5566988
PMID: 28871230
DOI: 10.3389/fphys.2017.00596

[…] ifferences between the two arbitrary data sets or multiple data sets were tested by Student's t test or one-way ANOVA to each lectin signal using SPSS v. 19. The original data was further analyzed by Expander 6.0 (http://acgt.cs.tau.ac.il/expander/) in order to perform a hierarchical clustering analysis. […]

call_split

Acellular Dermal Matrix Versus Inferior Deepithelialized Flap Breast Reconstruction: Equivalent Outcomes, with Increased Cost

2017
PMCID: 5505849
PMID: 28740788
DOI: 10.1097/GOX.0000000000001382
call_split See protocol

[…] A retrospective, single-institution study was performed between July 1, 2012, and June 30, 2014, examining all immediate expander BRs using ADM or IDF. Included were all patients who underwent an acellular dermis or IDF immediate PMBR, with or without radiotherapy treatment. Patients who were younger than 18 years of ag […]

library_books

Serum glycopattern and Maackia amurensis lectin II binding glycoproteins in autism spectrum disorder

2017
Sci Rep
PMCID: 5423032
PMID: 28485374
DOI: 10.1038/srep46041

[…] dicated up-regulation or down-regulation. Differences between the two arbitrary data sets were tested by Paired student’s t-test using SPSS Statistics 19. The original data were further analyzed with Expander 6.0 (http://acgt.cs.tau.ac.il/expander/) to perform a hierarchical clustering analysis. […]


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EXPANDER institution(s)
Blavatnik School of Computer Science, Tel Aviv University, Tel Aviv, Israel; Department of Human Molecular Genetics and Biochemistry, Tel Aviv University, Tel Aviv, Israel; Division of Gene Regulation, Netherlands Cancer Institute, Amsterdam, Netherlands; Faculty of Mathematics and Computer Science, Weizmann Institute of Science, Rehovot, Israel; Whitehead Institute for Biomedical Research, Cambridge, MA, USA
EXPANDER funding source(s)
Supported in part by the Israel Science Foundation (Grant No. 802/08) and by the European Community’s Seventh Framework Programme (Grants HEALTH-F4-2007-200767 for the APO-SYS project and HEALTH-F4-2009-223575 for the TRIREME project).

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