ExpaRNA protocols

View ExpaRNA computational protocol

ExpaRNA statistics

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Associated diseases

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ExpaRNA specifications

Information


Unique identifier OMICS_24265
Name ExpaRNA
Interface Web user interface
Restrictions to use None
Input data A pair of RNA sequences and secondary structures in dot–bracket notation.
Input format FASTA
Output data The optimal set of EPMs between the input RNAs.
Output format TXT
Computer skills Basic
Version 1.0.0
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Rolf Backofen <>

Additional information


http://rna.informatik.uni-freiburg.de/Help.jsp?toolName=ExpaRNA

Publications for ExpaRNA

ExpaRNA in pipeline

2013
PMCID: 3623918
PMID: 23593343
DOI: 10.1371/journal.pone.0060891

[…] in our ssu rdna clones was examined for all 49 clones. analysis was carried out using ballerophon (http://comp-bio.anu.edu.au/bellerophon/bellerophon.pl) with default setting (200 bp window) ., the exparna tool was used in comparative structural rna analysis to compute the best arrangement of sequence-structure motifs common among the rn variants. the locarna tool was also used for multiple […]


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ExpaRNA in publication

PMCID: 3623918
PMID: 23593343
DOI: 10.1371/journal.pone.0060891

[…] in our ssu rdna clones was examined for all 49 clones. analysis was carried out using ballerophon (http://comp-bio.anu.edu.au/bellerophon/bellerophon.pl) with default setting (200 bp window) ., the exparna tool was used in comparative structural rna analysis to compute the best arrangement of sequence-structure motifs common among the rn variants. the locarna tool was also used for multiple […]


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ExpaRNA institution(s)
Bioinformatics Group, University of Freiburg, Freiburg, Germany; Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA
ExpaRNA funding source(s)
Supported by German Research Foundation (DFG) (BA 2168/2-1, BA 2168/3-1, BA 2168/4-1 and WI 3628/1-1); German Federal Ministry of Education and Research (BMBF) (0313921).

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