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Protocols

ExPASy specifications

Information


Unique identifier OMICS_13597
Name ExPASy
Alternative name Expert Protein Analysis System
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Heinz Stockinger

Publication for Expert Protein Analysis System

ExPASy citations

 (4282)
library_books

Identification of a flagellar protein implicated in the gravitaxis in the flagellate Euglena gracilis

2018
Sci Rep
PMCID: 5954063
PMID: 29765103
DOI: 10.1038/s41598-018-26046-8

[…] The analysis of the predicted domains of EgPCDUF4201 was performed using expasy online tool, COILS (http://embnet.vital-it.ch/software/COILS_form.html) and an online database for the prediction of Calmodulin binding sites (http://calcium.uhnres.utoronto.ca/ctdb/ctdb/home.h […]

call_split

The cell wall hydrolase Pmp23 is important for assembly and stability of the division ring in Streptococcus pneumoniae

2018
Sci Rep
PMCID: 5954120
PMID: 29765094
DOI: 10.1038/s41598-018-25882-y
call_split See protocol

[…] The Swiss Model server (http://swissmodel.expasy.org/) was used to generate models of the soluble domain of Pmp23 based on the structures of CwlT from C. difficile and S. aureus (PDB codes 4HPE and 4FDY, respectively). Both models display hig […]

library_books

Immune Informatic Analysis and Design of Peptide Vaccine From Multi epitopes Against Corynebacterium pseudotuberculosis

2018
Bioinform Biol Insights
PMCID: 5954444
PMID: 29780242
DOI: 10.1177/1177932218755337

[…] , isoelectric point (IP), stability index, half-life in vitro and in vivo, aliphatic index, and grand average of hydropathicity (GRAVY) were estimated by the ProtParam server (available at http://web.expasy.org/protparam). […]

library_books

Cloning and characterization of a pyrethroid pesticide decomposing esterase gene, Est3385, from Rhodopseudomonas palustris PSB S

2018
Sci Rep
PMCID: 5943319
PMID: 29743662
DOI: 10.1038/s41598-018-25734-9

[…] es found in different pyrethroid degrading bacterial strains to identify the sequence of esterase Est3385 in R. palustris strain PSB-S. The deduced molecular weight of Est3385 was estimated using the ExPASy software (http://web.expasy.org/compute_pi/). The protein structure of EST3385 was predicted and constructed with homology-modelling (https://www.swissmodel.expasy.org/).The resulting full leng […]

call_split

Complete mitochondrial and rDNA complex sequences of important vector species of Biomphalaria, obligatory hosts of the human infecting blood fluke, Schistosoma mansoni

2018
Sci Rep
PMCID: 5943310
PMID: 29743617
DOI: 10.1038/s41598-018-25463-z
call_split See protocol

[…] For other criteria, default settings were applied (E-value exponent: 2; final maximum overlap: 50; fragment quality factor: 100). Moreover, we have re-checked mitogenome sequences manually using the ExPASY translation tool (http://web.expasy.org/translate/), which enabled us to see the correct reading frames of protein coding genes and to identify potential start and stop codons in the flanking r […]

library_books

Discovery and functional characterisation of a luqin type neuropeptide signalling system in a deuterostome

2018
Sci Rep
PMCID: 5940834
PMID: 29740074
DOI: 10.1038/s41598-018-25606-2

[…] g frames of two luqin-type receptors were identified and the sequences of the 347 and 388 residue proteins encoded by these two transcripts were determined using the ExPASy translate tool (http://web.expasy.org/translate/) and named ArLQR1 and ArLQR2, respectively. To further investigate the relationship of ArLQR1 and ArLQR2 with luqin/RYamide-type receptors from other species (see supplementary T […]

Citations

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ExPASy institution(s)
Vital-IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland; Molecular Modelling Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland; Computational Structural Biology Group, University of Basel, SIB Swiss Institute of Bioinformatics, Basel, Switzerland; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland; Department of Statistics, Harvard University, Cambridge, USA; Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland; Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland
ExPASy funding source(s)
This project was supported by the Swiss State Secretariat for Education and Research.

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