EXPath specifications

Information


Unique identifier OMICS_09416
Name EXPath
Restrictions to use None
Maintained Yes

Taxon


  • Plants and Fungi
    • Arabidopsis thaliana
    • Oryza sativa
    • Zea mays

Maintainer


  • person_outline Wen-Chi Chang

Publication for EXPath

EXPath citations

 (2)
library_books

Identification of miRNA mediated drought responsive multi tiered regulatory network in drought tolerant rice, Nagina 22

2017
Sci Rep
PMCID: 5684420
PMID: 29133823
DOI: 10.1038/s41598-017-15450-1

[…] the 5′ end of the miRNA were considered with following cutoffs; p-value ≤ 1, number of cleaved reads ≥ 5 (sum from all the datasets).The Gene Ontology (GO) enrichment analysis was performed using the ExPATH database and the enrichment terms were visualized using the customized comparison tool of AgriGO (http://bioinfo.cau.edu.cn/agriGO/). The GO terms with ≤0.01 pvalue were considered. […]

library_books

EXPath tool—a system for comprehensively analyzing regulatory pathways and coexpression networks from high throughput transcriptome data

2017
PMCID: 5737374
PMID: 28338930
DOI: 10.1093/dnares/dsx009

[…] There are several useful webservers or software packages that have been developed to help biologists to systematically analyze their high-throughput transcriptome data. compares the EXPath Tool and other similar resources. BioWardrob and T-REx conduct differentially expressed analysis and co-expression analysis according to the expression levels of genes. BioWardrob can conduct a […]

EXPath institution(s)
College of Biosciences and Biotechnology, Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan, Taiwan

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